Problem Based Learning SoSe 2018

Type 5S (1 year module, 2  SWS/Summer, 3 SWS/Winter)
ECTS 9
Lecturer Burkhard Rost
Time Monday, 12:30 - 14:00
Room MI 01.09.034
Language English

News

The timeplan for the winter term is up. Attendance to all meetings is mandatory.

If you cannot make it to a meeting, please let us know in advance.

Kick-off Meeting

Apr. 16th, 12:00, Room MI 01.09.034 

Timeplan for WiSe 18/19

Date   Student Groups Supervisors

29.10.18

Intermediate Student Presentation

Haucke/Born, Kiefl/Riess, Bock/Dvoretskii

Jonas Reeb, Maria Schelling

5.11.18

Intermediate Student Presentation

Meyer/Yuan, Pelz/Andrusca, Marsoner, Orfandis/Henke

Michael Bernhofer, Michael Heinzinger

12.11.18

Rostlab presentation (1. How to evaluate Machine Learning, 2. Tips on scientific writing)

 

Maria Schelling

14.1.19

Final student presentations

Marsoner, Orfandis, Henke

Michael Bernhofer

21.1.19

Final student presentations

Marsoner, Kiefl, Riess, Born

Jonas Reeb, Maria Schelling, Michael Bernhofer

28.1.19

Final student presentations

Bock, Dvoretskii, Andrusca

Jonas Reeb, Michael Heinzinger

4.2.19

 
Final student presentations

Meyer, Yuan, Pelz

Michael Heinzinger

Topics for SoSe 18

Topic Intermediate talk topic Supervisor Student ANN Student SVM Date for intermediate talk

Secondary structure, 8 states

Secondary Structure (DSSP)

Michael Heinzinger

Matthias Meyer

Kevin Yuan

11.06

Secondary structure, 3 states

ML introduction

Michael Heinzinger

Konstantin Pelz

Sandra Andrusca

11.06

Subcellular localization (6 states, bacteria)

Subcellular localization in general

Maria Schelling

Adrian Henke

Xaver Haack

11.06

Nuclear traveler proteins

Subnuclear localization, concept of multi-class localization

Maria Schelling

Marco Haucke

Kilian Born 18.06

Transmembrane Proteins/Helices

Transmembrane proteins (general overview)

Michael Bernhofer

Laura Marsoner

Julian Merl

18.06

Sarcoma (Radiomics)

Radiomics (general overview), Soft tissue sarcoma

Michael Bernhofer

Georgios Orfandis

Adrian Henke

11.06

Transmembrane

protein expression

 
(Transmembrane) protein structure determination

Jonas Reeb

Yannick Kiefl

Christopher Riess

18.06

Protein interaction

Protein interaction and networks

Jonas Reeb

Oliver Bock

Stefan Dvoretskii

18.06

 

Meeting slides

16.04.2018

14.05.2018 - How to give a good presentation

25.06.2018 - Machine Learning Introduction

02.07.2018 - ProtVec What's next?

12.11.2018 - Evaluation of Machine Learning and Tips on Scientific Paper Writing

Material

For your final report, please use the Bioinformatics template

Literature

Also check the literature mentioned in slides from the kick-off meeting. When in doubt, contact your supervisor.

Secondary structure prediction

Radiomics

Transmembrane proteins/helices

Transmembrane protein expression

Protein interaction

Subcellular localization

Subnuclear localization