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Type | 5S (1 year module, 2 SWS/Summer, 3 SWS/Winter) |
ECTS | 9 |
Lecturer | Burkhard Rost |
Time | Monday, 12:30 - 14:00 |
Room | MI 01.09.034 |
Language | English |
The timeplan for the winter term is up. Attendance to all meetings is mandatory.
If you cannot make it to a meeting, please let us know in advance.
Apr. 16th, 12:00, Room MI 01.09.034
Date | Student Groups | Supervisors | |
---|---|---|---|
29.10.18 |
Intermediate Student Presentation |
Haucke/Born, Kiefl/Riess, Bock/Dvoretskii |
Jonas Reeb, Maria Schelling |
5.11.18 |
Intermediate Student Presentation |
Meyer/Yuan, Pelz/Andrusca, Marsoner, Orfandis/Henke |
Michael Bernhofer, Michael Heinzinger |
12.11.18 |
Rostlab presentation (1. How to evaluate Machine Learning, 2. Tips on scientific writing) |
|
Maria Schelling |
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21.1.19 |
Final student presentations |
Marsoner, Kiefl, Riess, Born |
Jonas Reeb, Maria Schelling, Michael Bernhofer |
28.1.19 |
Final student presentations |
Bock, Dvoretskii, Andrusca |
Jonas Reeb, Michael Heinzinger |
4.2.19 |
Final student presentations |
Meyer, Yuan, Pelz |
Michael Heinzinger |
Topic | Intermediate talk topic | Supervisor | Student ANN | Student SVM | Date for intermediate talk |
---|---|---|---|---|---|
Secondary structure, 8 states |
Secondary Structure (DSSP) |
Michael Heinzinger |
Matthias Meyer |
Kevin Yuan |
11.06 |
Secondary structure, 3 states |
ML introduction |
Michael Heinzinger |
Konstantin Pelz |
Sandra Andrusca |
11.06 |
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Nuclear traveler proteins |
Subnuclear localization, concept of multi-class localization |
Maria Schelling |
|
Kilian Born | 18.06 |
Transmembrane Proteins/Helices |
Transmembrane proteins (general overview) |
Michael Bernhofer |
Laura Marsoner |
|
18.06 |
Sarcoma (Radiomics) |
Radiomics (general overview), Soft tissue sarcoma |
Michael Bernhofer |
Georgios Orfandis |
Adrian Henke |
11.06 |
Transmembrane protein expression |
(Transmembrane) protein structure determination |
Jonas Reeb |
Yannick Kiefl |
Christopher Riess |
18.06 |
Protein interaction |
Protein interaction and networks |
Jonas Reeb |
Oliver Bock |
Stefan Dvoretskii |
18.06 |
14.05.2018 - How to give a good presentation
25.06.2018 - Machine Learning Introduction
02.07.2018 - ProtVec What's next?
12.11.2018 - Evaluation of Machine Learning and Tips on Scientific Paper Writing
For your final report, please use the Bioinformatics template
Also check the literature mentioned in slides from the kick-off meeting. When in doubt, contact your supervisor.
Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., & Walter, P. (2008). Molecular biology of the cell. Figure (5th ed.). New York: Garland Science. (Section "Protein Structure Can Be Determined Using X-Ray Diffraction" and following. Can be obtained at the library, or contact Jonas)