Publications

Found 232 results

Filters: Author is Rost, Burkhard [Clear All Filters]

2003

Nair R, Rost B. Better prediction of sub-cellular localization by combining evolutionary and structural information. Proteins. 2003 ;53(4):917-30.

Eyrich VA, Przybylski D, Y Y Koh I, Graña O, Pazos F, Valencia A, Rost B. CAFASP3 in the spotlight of EVA. Proteins. 2003 ;53 Suppl 6:548-60.

Liu J, Rost B. Domains, motifs and clusters in the protein universe. Curr Opin Chem Biol. 2003 ;7(1):5-11.

Carter P, Andersen CAF, Rost B. DSSPcont: Continuous secondary structure assignments for proteins. Nucleic Acids Res. 2003 ;31(13):3293-5.

Y Y Koh I, Eyrich VA, Marti-Renom MA, Przybylski D, Madhusudhan MS, Eswar N, Graña O, Pazos F, Valencia A, Sali A, et al. EVA: Evaluation of protein structure prediction servers. Nucleic Acids Res. 2003 ;31(13):3311-5.

Nair R, Rost B. LOC3D: annotate sub-cellular localization for protein structures. Nucleic Acids Res. 2003 ;31(13):3337-40.

Eyrich VA, Rost B. META-PP: single interface to crucial prediction servers. Nucleic Acids Res. 2003 ;31(13):3308-10.

Nair R, Carter P, Rost B. NLSdb: database of nuclear localization signals. Nucleic Acids Res. 2003 ;31(1):397-9.

Liu J, Rost B. NORSp: Predictions of long regions without regular secondary structure. Nucleic Acids Res. 2003 ;31(13):3833-5.

Carter P, Liu J, Rost B. PEP: Predictions for Entire Proteomes. Nucleic Acids Res. 2003 ;31(1):410-3.

Ofran Y, Rost B. Predicted protein-protein interaction sites from local sequence information. FEBS Lett. 2003 ;544(1-3):236-9.

Rost B. Prediction in 1D: secondary structure, membrane helices, and accessibility. Methods Biochem Anal. 2003 ;44:559-87.

Rost B, Liu J. The PredictProtein server. Nucleic Acids Res. 2003 ;31(13):3300-4.

Andersen CAF, Rost B. Secondary structure assignment. Methods Biochem Anal. 2003 ;44:341-63.

Aramini JM, Huang YJ, Cort JR, Goldsmith-Fischman S, Xiao R, Shih L-Y, Ho CK, Liu J, Rost B, Honig B, et al. Solution NMR structure of the 30S ribosomal protein S28E from Pyrococcus horikoshii. Protein Sci. 2003 ;12(12):2823-30.

Kernytsky A, Rost B. Static benchmarking of membrane helix predictions. Nucleic Acids Res. 2003 ;31(13):3642-4.

Zidovetzki R, Rost B, Armstrong DL, Pecht I. Transmembrane domains in the functions of Fc receptors. Biophys Chem. 2003 ;100(1-3):555-75.

Mika S, Rost B. UniqueProt: Creating representative protein sequence sets. Nucleic Acids Res. 2003 ;31(13):3789-91.

2002

Przybylski D, Rost B. Alignments grow, secondary structure prediction improves. Proteins. 2002 ;46(2):197-205.

Rost B, Honig B, Valencia A. Bioinformatics in structural genomics. Bioinformatics. 2002 ;18(7):897-8.

Andersen CAF, Palmer AG, Brunak S, Rost B. Continuum secondary structure captures protein flexibility. Structure. 2002 ;10(2):175-84.

Rost B. Did evolution leap to create the protein universe?. Curr Opin Struct Biol. 2002 ;12(3):409-16.

Rost B. Enzyme function less conserved than anticipated. J Mol Biol. 2002 ;318(2):595-608.

Pollastri G, Przybylski D, Rost B, Baldi P. Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles. Proteins. 2002 ;47(2):228-35.

Nair R, Rost B. Inferring sub-cellular localization through automated lexical analysis. Bioinformatics. 2002 ;18 Suppl 1:S78-86.

Chen CPeter, Rost B. Long membrane helices and short loops predicted less accurately. Protein Sci. 2002 ;11(12):2766-73.

Liu J, Tan H, Rost B. Loopy proteins appear conserved in evolution. J Mol Biol. 2002 ;322(1):53-64.

Marti-Renom MA, Madhusudhan MS, Fiser A, Rost B, Sali A. Reliability of assessment of protein structure prediction methods. Structure. 2002 ;10(3):435-40.

Nair R, Rost B. Sequence conserved for subcellular localization. Protein Sci. 2002 ;11(12):2836-47.

Chen CPeter, Rost B. State-of-the-art in membrane protein prediction. Appl Bioinformatics. 2002 ;1(1):21-35.

Liu J, Rost B. Target space for structural genomics revisited. Bioinformatics. 2002 ;18(7):922-33.

Chen CPeter, Kernytsky A, Rost B. Transmembrane helix predictions revisited. Protein Sci. 2002 ;11(12):2774-91.

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