Publications

Found 261 results
2002
Liu J, Tan H, Rost B. Loopy proteins appear conserved in evolution. J Mol Biol. 2002 ;322(1):53-64.
Marti-Renom MA, Madhusudhan MS, Fiser A, Rost B, Sali A. Reliability of assessment of protein structure prediction methods. Structure. 2002 ;10(3):435-40.
Nair R, Rost B. Sequence conserved for subcellular localization. Protein Sci. 2002 ;11(12):2836-47.
Chen CPeter, Rost B. State-of-the-art in membrane protein prediction. Appl Bioinformatics. 2002 ;1(1):21-35.
Liu J, Rost B. Target space for structural genomics revisited. Bioinformatics. 2002 ;18(7):922-33.
Chen CPeter, Kernytsky A, Rost B. Transmembrane helix predictions revisited. Protein Sci. 2002 ;11(12):2774-91.
2001
Fischer D, Elofsson A, Rychlewski L, Pazos F, Valencia A, Rost B, Ortiz AR, Dunbrack, Jr. RL. CAFASP2: the second critical assessment of fully automated structure prediction methods. Proteins. 2001 ;Suppl 5:171-83.
Liu J, Rost B. Comparing function and structure between entire proteomes. Protein Sci. 2001 ;10:1970-9.
Eyrich VA, Marti-Renom MA, Przybylski D, Madhusudhan MS, Fiser A, Pazos F, Valencia A, Sali A, Rost B. EVA: continuous automatic evaluation of protein structure prediction servers. Bioinformatics. 2001 ;17:1242-3.
Rost B, Eyrich VA. EVA: large-scale analysis of secondary structure prediction. Proteins. 2001 ;Suppl 5:192-9.
Hauer K, Rost B, Rutschle K, Opitz H, Specht N, Bartsch P, Oster P, Schlierf G. Exercise training for rehabilitation and secondary prevention of falls in geriatric patients with a history of injurious falls. J Am Geriatr Soc. 2001 ;49:10-20.
Hellwig P, Rost B, Mantele W. Redox dependent conformational changes in the mixed valence form of the cytochrome c oxidase from p. The reorganization of glutamic acid 278 is coupled to the electron transfer from/to heme a and the binuclear center. denitrificans. Spectrochim Acta A Mol Biomol Spectrosc. 2001 ;57A:1123-31.
Rost B. Review: protein secondary structure prediction continues to rise. J Struct Biol. 2001 ;134:204-18.
2000
Hediger C, Rost B, Itin P. Cutaneous manifestations in anorexia nervosa. Schweiz Med Wochenschr. 2000 ;130:565-75.
Cokol M, Nair R, Rost B. Finding nuclear localization signals. EMBO Rep. 2000 ;1:411-5.
Riebesell U, Zondervan I, Rost B, Tortell PD, Zeebe RE, Morel FM. Reduced calcification of marine plankton in response to increased atmospheric CO2. Nature. 2000 ;407:364-7.
Rost B, Sander C. Third generation prediction of secondary structures. Methods Mol Biol. 2000 ;143:71-95.
1999
Fischer D, Barret C, Bryson K, Elofsson A, Godzik A, Jones D, Karplus KJ, Kelley LA, MacCallum RM, Pawowski K, et al. CAFASP-1: critical assessment of fully automated structure prediction methods. Proteins. 1999 ;Suppl 3:209-17.
Oster P, Rost BM, Velte U, Schlierf G. Comparative nutrition evaluation with the Mini Nutritional Assessment and the Nutritional Risk Assessment Scale. Nestle Nutr Workshop Ser Clin Perform Programme. 1999 ;1:35-9; discussion 39-40.
Olmea O, Rost B, Valencia A. Effective use of sequence correlation and conservation in fold recognition. J Mol Biol. 1999 ;293:1221-39.
Gupta RK, Anderson R, Cecchini D, Rost B, Xu J, Gendreau K, Saroff DL, Marchant C, Siber GR. Evaluation of a guinea pig model to assess interference in the immunogenicity of different components of a combination vaccine comprising diphtheria, tetanus and acellular pertussis (DTaP) vaccine and haemophilus influenzae type b capsular polysaccharide . Biologicals. 1999 ;27:167-76.
Roser W, Bubl R, Buergin D, Seelig J, Radue EW, Rost B. Metabolic changes in the brain of patients with anorexia and bulimia nervosa as detected by proton magnetic resonance spectroscopy. Int J Eat Disord. 1999 ;26:119-36.
Zemla A, Venclovas C, Fidelis K, Rost B. A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment. Proteins. 1999 ;34:220-3.
Rost B, Roser W, Bubl R, Radue EW, Buergin D. MRS of the brain in patients with anorexia or bulimia nervosa. Hosp Med. 1999 ;60:474-6.
Pazos F, Rost B, Valencia A. A platform for integrating threading results with protein family analyses. Bioinformatics. 1999 ;15:1062-3.
Rost B, Behr J, Hellwig P, Richter OM, Ludwig B, Michel H, Mantele W. Time-resolved FT-IR studies on the CO adduct of Paracoccus denitrificans cytochrome c oxidase: comparison of the fully reduced and the mixed valence form. Biochemistry. 1999 ;38:7565-71.
Rost B. Twilight zone of protein sequence alignments. Protein Eng. 1999 ;12:85-94.
1998
Andrade MA, O'Donoghue SI, Rost B. Adaptation of protein surfaces to subcellular location. J Mol Biol. 1998 ;276:517-25.
Rost B. Marrying structure and genomics. Structure. 1998 ;6:259-63.
Zidovetzki R, Rost B, Pecht I. Role of transmembrane domains in the functions of B- and T-cell receptors. Immunol Lett. 1998 ;64:97-107.
1997
Rost B. Better 1D predictions by experts with machines. Proteins. 1997 ;Suppl 1:192-7.
Rost B, Schneider R, Sander C. Protein fold recognition by prediction-based threading. J Mol Biol. 1997 ;270:471-80.
Rost B. Protein structures sustain evolutionary drift. Fold Des. 1997 ;2:S19-24.
Rost B, O'Donoghue S. Sisyphus and prediction of protein structure. Comput Appl Biosci. 1997 ;13:345-56.
Oster P, Hauer K, Specht N, Rost B, Baertsch P, Schlierf G. [Strength and coordination training for prevention of falls in the elderly]. Z Gerontol Geriatr. 1997 ;30:289-92.
1996
Rost B, Sander C. Bridging the protein sequence-structure gap by structure predictions. Annu Rev Biophys Biomol Struct. 1996 ;25:113-36.
Hellwig P, Rost B, Kaiser U, Ostermeier C, Michel H, Mantele W. Carboxyl group protonation upon reduction of the Paracoccus denitrificans cytochrome c oxidase: direct evidence by FTIR spectroscopy. FEBS Lett. 1996 ;385:53-7.
Gupta RK, Anderson R, Cecchini D, Rost B, Griffin, Jr. P, Benscoter K, Xu J, Montanez-Ortiz L, Siber GR. Development of a guinea-pig model for potency/immunogenicity evaluation of diphtheria, tetanus acellular pertussis (DTaP) and Haemophilus influenzae type b polysaccharide conjugate vaccines. Dev Biol Stand. 1996 ;86:283-96.
Rost B. PHD: predicting one-dimensional protein structure by profile-based neural networks. Methods Enzymol. 1996 ;266:525-39.
Rost B, Valencia A. Pitfalls of protein sequence analysis. Curr Opin Biotechnol. 1996 ;7:457-61.
Rost B, Casadio R, Fariselli P. Refining neural network predictions for helical transmembrane proteins by dynamic programming. Proc Int Conf Intell Syst Mol Biol. 1996 ;4:192-200.
Gupta RK, Griffin, Jr. P, Chang AC, Rivera R, Anderson R, Rost B, Cecchini D, Nicholson M, Siber GR. The role of adjuvants and delivery systems in modulation of immune response to vaccines. Adv Exp Med Biol. 1996 ;397:105-13.
Rost B, Fariselli P, Casadio R. Topology prediction for helical transmembrane proteins at 86% accuracy. Protein Sci. 1996 ;5:1704-18.
1995
Gupta RK, Rost BE, Relyveld E, Siber GR. Adjuvant properties of aluminum and calcium compounds. Pharm Biotechnol. 1995 ;6:229-48.
Rost B, Sander C. Progress of 1D protein structure prediction at last. Proteins. 1995 ;23:295-300.
Rost B. TOPITS: threading one-dimensional predictions into three-dimensional structures. Proc Int Conf Intell Syst Mol Biol. 1995 ;3:314-21.
Rost B, Casadio R, Fariselli P, Sander C. Transmembrane helices predicted at 95% accuracy. Protein Sci. 1995 ;4:521-33.
1994
Rost B, Sander C. Combining evolutionary information and neural networks to predict protein secondary structure. Proteins. 1994 ;19:55-72.
Rost B, Sander C. Conservation and prediction of solvent accessibility in protein families. Proteins. 1994 ;20:216-26.
Rost B, Sander C, Schneider R. PHD–an automatic mail server for protein secondary structure prediction. Comput Appl Biosci. 1994 ;10:53-60.

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