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Publications
Found 287 results
2003
Nair R
,
Rost B
.
Better prediction of sub-cellular localization by combining evolutionary and structural information.
Proteins. 2003 ;53(4):917-30.
Eyrich VA
,
Przybylski D
,
Y Y Koh I
,
Graña O
,
Pazos F
,
Valencia A
,
Rost B
.
CAFASP3 in the spotlight of EVA.
Proteins. 2003 ;53 Suppl 6:548-60.
Liu J
,
Rost B
.
Domains, motifs and clusters in the protein universe.
Curr Opin Chem Biol. 2003 ;7(1):5-11.
Carter P
,
Andersen CAF
,
Rost B
.
DSSPcont: Continuous secondary structure assignments for proteins.
Nucleic Acids Res. 2003 ;31(13):3293-5.
Y Y Koh I
,
Eyrich VA
,
Marti-Renom MA
,
Przybylski D
,
Madhusudhan MS
,
Eswar N
,
Graña O
,
Pazos F
,
Valencia A
,
Sali A
, et al.
EVA: Evaluation of protein structure prediction servers.
Nucleic Acids Res. 2003 ;31(13):3311-5.
Nair R
,
Rost B
.
LOC3D: annotate sub-cellular localization for protein structures.
Nucleic Acids Res. 2003 ;31(13):3337-40.
Eyrich VA
,
Rost B
.
META-PP: single interface to crucial prediction servers.
Nucleic Acids Res. 2003 ;31(13):3308-10.
Nair R
,
Carter P
,
Rost B
.
NLSdb: database of nuclear localization signals.
Nucleic Acids Res. 2003 ;31(1):397-9.
Liu J
,
Rost B
.
NORSp: Predictions of long regions without regular secondary structure.
Nucleic Acids Res. 2003 ;31(13):3833-5.
Carter P
,
Liu J
,
Rost B
.
PEP: Predictions for Entire Proteomes.
Nucleic Acids Res. 2003 ;31(1):410-3.
Ofran Y
,
Rost B
.
Predicted protein-protein interaction sites from local sequence information.
FEBS Lett. 2003 ;544(1-3):236-9.
Rost B
.
Prediction in 1D: secondary structure, membrane helices, and accessibility.
Methods Biochem Anal. 2003 ;44:559-87.
Rost B
,
Liu J
.
The PredictProtein server.
Nucleic Acids Res. 2003 ;31(13):3300-4.
Andersen CAF
,
Rost B
.
Secondary structure assignment.
Methods Biochem Anal. 2003 ;44:341-63.
Aramini JM
,
Huang YJ
,
Cort JR
,
Goldsmith-Fischman S
,
Xiao R
,
Shih L-Y
,
Ho CK
,
Liu J
,
Rost B
,
Honig B
, et al.
Solution NMR structure of the 30S ribosomal protein S28E from Pyrococcus horikoshii.
Protein Sci. 2003 ;12(12):2823-30.
Kernytsky A
,
Rost B
.
Static benchmarking of membrane helix predictions.
Nucleic Acids Res. 2003 ;31(13):3642-4.
Zidovetzki R
,
Rost B
,
Armstrong DL
,
Pecht I
.
Transmembrane domains in the functions of Fc receptors.
Biophys Chem. 2003 ;100(1-3):555-75.
Mika S
,
Rost B
.
UniqueProt: Creating representative protein sequence sets.
Nucleic Acids Res. 2003 ;31(13):3789-91.
2002
Przybylski D
,
Rost B
.
Alignments grow, secondary structure prediction improves.
Proteins. 2002 ;46(2):197-205.
Rost B
,
Honig B
,
Valencia A
.
Bioinformatics in structural genomics.
Bioinformatics. 2002 ;18(7):897-8.
Andersen CAF
,
Palmer AG
,
Brunak S
,
Rost B
.
Continuum secondary structure captures protein flexibility.
Structure. 2002 ;10(2):175-84.
Rost B
.
Did evolution leap to create the protein universe?
. Curr Opin Struct Biol. 2002 ;12(3):409-16.
Rost B
.
Enzyme function less conserved than anticipated.
J Mol Biol. 2002 ;318(2):595-608.
Pollastri G
,
Przybylski D
,
Rost B
,
Baldi P
.
Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles.
Proteins. 2002 ;47(2):228-35.
Nair R
,
Rost B
.
Inferring sub-cellular localization through automated lexical analysis.
Bioinformatics. 2002 ;18 Suppl 1:S78-86.
Chen CPeter
,
Rost B
.
Long membrane helices and short loops predicted less accurately.
Protein Sci. 2002 ;11(12):2766-73.
Liu J
,
Tan H
,
Rost B
.
Loopy proteins appear conserved in evolution.
J Mol Biol. 2002 ;322(1):53-64.
Marti-Renom MA
,
Madhusudhan MS
,
Fiser A
,
Rost B
,
Sali A
.
Reliability of assessment of protein structure prediction methods.
Structure. 2002 ;10(3):435-40.
Nair R
,
Rost B
.
Sequence conserved for subcellular localization.
Protein Sci. 2002 ;11(12):2836-47.
Chen CPeter
,
Rost B
.
State-of-the-art in membrane protein prediction.
Appl Bioinformatics. 2002 ;1(1):21-35.
Liu J
,
Rost B
.
Target space for structural genomics revisited.
Bioinformatics. 2002 ;18(7):922-33.
Chen CPeter
,
Kernytsky A
,
Rost B
.
Transmembrane helix predictions revisited.
Protein Sci. 2002 ;11(12):2774-91.
2001
Fischer D
,
Elofsson A
,
Rychlewski L
,
Pazos F
,
Valencia A
,
Rost B
,
Ortiz AR
,
Dunbrack, Jr. RL
.
CAFASP2: the second critical assessment of fully automated structure prediction methods
. Proteins. 2001 ;Suppl 5:171-83.
Liu J
,
Rost B
.
Comparing function and structure between entire proteomes
. Protein Sci. 2001 ;10:1970-9.
Eyrich VA
,
Marti-Renom MA
,
Przybylski D
,
Madhusudhan MS
,
Fiser A
,
Pazos F
,
Valencia A
,
Sali A
,
Rost B
.
EVA: continuous automatic evaluation of protein structure prediction servers
. Bioinformatics. 2001 ;17:1242-3.
Rost B
,
Eyrich VA
.
EVA: large-scale analysis of secondary structure prediction
. Proteins. 2001 ;Suppl 5:192-9.
Hauer K
,
Rost B
,
Rutschle K
,
Opitz H
,
Specht N
,
Bartsch P
,
Oster P
,
Schlierf G
.
Exercise training for rehabilitation and secondary prevention of falls in geriatric patients with a history of injurious falls
. J Am Geriatr Soc. 2001 ;49:10-20.
Hellwig P
,
Rost B
,
Mantele W
.
Redox dependent conformational changes in the mixed valence form of the cytochrome c oxidase from p. The reorganization of glutamic acid 278 is coupled to the electron transfer from/to heme a and the binuclear center. denitrificans
. Spectrochim Acta A Mol Biomol Spectrosc. 2001 ;57A:1123-31.
Rost B
.
Review: protein secondary structure prediction continues to rise
. J Struct Biol. 2001 ;134:204-18.
2000
Hediger C
,
Rost B
,
Itin P
.
Cutaneous manifestations in anorexia nervosa
. Schweiz Med Wochenschr. 2000 ;130:565-75.
Cokol M
,
Nair R
,
Rost B
.
Finding nuclear localization signals
. EMBO Rep. 2000 ;1:411-5.
Riebesell U
,
Zondervan I
,
Rost B
,
Tortell PD
,
Zeebe RE
,
Morel FM
.
Reduced calcification of marine plankton in response to increased atmospheric CO2
. Nature. 2000 ;407:364-7.
Rost B
,
Sander C
.
Third generation prediction of secondary structures
. Methods Mol Biol. 2000 ;143:71-95.
1999
Fischer D
,
Barret C
,
Bryson K
,
Elofsson A
,
Godzik A
,
Jones D
,
Karplus KJ
,
Kelley LA
,
MacCallum RM
,
Pawowski K
, et al.
CAFASP-1: critical assessment of fully automated structure prediction methods
. Proteins. 1999 ;Suppl 3:209-17.
Oster P
,
Rost BM
,
Velte U
,
Schlierf G
.
Comparative nutrition evaluation with the Mini Nutritional Assessment and the Nutritional Risk Assessment Scale
. Nestle Nutr Workshop Ser Clin Perform Programme. 1999 ;1:35-9; discussion 39-40.
Olmea O
,
Rost B
,
Valencia A
.
Effective use of sequence correlation and conservation in fold recognition
. J Mol Biol. 1999 ;293:1221-39.
Gupta RK
,
Anderson R
,
Cecchini D
,
Rost B
,
Xu J
,
Gendreau K
,
Saroff DL
,
Marchant C
,
Siber GR
.
Evaluation of a guinea pig model to assess interference in the immunogenicity of different components of a combination vaccine comprising diphtheria, tetanus and acellular pertussis (DTaP) vaccine and haemophilus influenzae type b capsular polysaccharide
. Biologicals. 1999 ;27:167-76.
Roser W
,
Bubl R
,
Buergin D
,
Seelig J
,
Radue EW
,
Rost B
.
Metabolic changes in the brain of patients with anorexia and bulimia nervosa as detected by proton magnetic resonance spectroscopy
. Int J Eat Disord. 1999 ;26:119-36.
Zemla A
,
Venclovas C
,
Fidelis K
,
Rost B
.
A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment
. Proteins. 1999 ;34:220-3.
Rost B
,
Roser W
,
Bubl R
,
Radue EW
,
Buergin D
.
MRS of the brain in patients with anorexia or bulimia nervosa
. Hosp Med. 1999 ;60:474-6.
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