Publications

Found 287 results

2003

Nair R, Rost B. Better prediction of sub-cellular localization by combining evolutionary and structural information. Proteins. 2003 ;53(4):917-30.

Eyrich VA, Przybylski D, Y Y Koh I, Graña O, Pazos F, Valencia A, Rost B. CAFASP3 in the spotlight of EVA. Proteins. 2003 ;53 Suppl 6:548-60.

Liu J, Rost B. Domains, motifs and clusters in the protein universe. Curr Opin Chem Biol. 2003 ;7(1):5-11.

Carter P, Andersen CAF, Rost B. DSSPcont: Continuous secondary structure assignments for proteins. Nucleic Acids Res. 2003 ;31(13):3293-5.

Y Y Koh I, Eyrich VA, Marti-Renom MA, Przybylski D, Madhusudhan MS, Eswar N, Graña O, Pazos F, Valencia A, Sali A, et al. EVA: Evaluation of protein structure prediction servers. Nucleic Acids Res. 2003 ;31(13):3311-5.

Nair R, Rost B. LOC3D: annotate sub-cellular localization for protein structures. Nucleic Acids Res. 2003 ;31(13):3337-40.

Eyrich VA, Rost B. META-PP: single interface to crucial prediction servers. Nucleic Acids Res. 2003 ;31(13):3308-10.

Nair R, Carter P, Rost B. NLSdb: database of nuclear localization signals. Nucleic Acids Res. 2003 ;31(1):397-9.

Liu J, Rost B. NORSp: Predictions of long regions without regular secondary structure. Nucleic Acids Res. 2003 ;31(13):3833-5.

Carter P, Liu J, Rost B. PEP: Predictions for Entire Proteomes. Nucleic Acids Res. 2003 ;31(1):410-3.

Ofran Y, Rost B. Predicted protein-protein interaction sites from local sequence information. FEBS Lett. 2003 ;544(1-3):236-9.

Rost B. Prediction in 1D: secondary structure, membrane helices, and accessibility. Methods Biochem Anal. 2003 ;44:559-87.

Rost B, Liu J. The PredictProtein server. Nucleic Acids Res. 2003 ;31(13):3300-4.

Andersen CAF, Rost B. Secondary structure assignment. Methods Biochem Anal. 2003 ;44:341-63.

Aramini JM, Huang YJ, Cort JR, Goldsmith-Fischman S, Xiao R, Shih L-Y, Ho CK, Liu J, Rost B, Honig B, et al. Solution NMR structure of the 30S ribosomal protein S28E from Pyrococcus horikoshii. Protein Sci. 2003 ;12(12):2823-30.

Kernytsky A, Rost B. Static benchmarking of membrane helix predictions. Nucleic Acids Res. 2003 ;31(13):3642-4.

Zidovetzki R, Rost B, Armstrong DL, Pecht I. Transmembrane domains in the functions of Fc receptors. Biophys Chem. 2003 ;100(1-3):555-75.

Mika S, Rost B. UniqueProt: Creating representative protein sequence sets. Nucleic Acids Res. 2003 ;31(13):3789-91.

2002

Przybylski D, Rost B. Alignments grow, secondary structure prediction improves. Proteins. 2002 ;46(2):197-205.

Rost B, Honig B, Valencia A. Bioinformatics in structural genomics. Bioinformatics. 2002 ;18(7):897-8.

Andersen CAF, Palmer AG, Brunak S, Rost B. Continuum secondary structure captures protein flexibility. Structure. 2002 ;10(2):175-84.

Rost B. Did evolution leap to create the protein universe?. Curr Opin Struct Biol. 2002 ;12(3):409-16.

Rost B. Enzyme function less conserved than anticipated. J Mol Biol. 2002 ;318(2):595-608.

Pollastri G, Przybylski D, Rost B, Baldi P. Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles. Proteins. 2002 ;47(2):228-35.

Nair R, Rost B. Inferring sub-cellular localization through automated lexical analysis. Bioinformatics. 2002 ;18 Suppl 1:S78-86.

Chen CPeter, Rost B. Long membrane helices and short loops predicted less accurately. Protein Sci. 2002 ;11(12):2766-73.

Liu J, Tan H, Rost B. Loopy proteins appear conserved in evolution. J Mol Biol. 2002 ;322(1):53-64.

Marti-Renom MA, Madhusudhan MS, Fiser A, Rost B, Sali A. Reliability of assessment of protein structure prediction methods. Structure. 2002 ;10(3):435-40.

Nair R, Rost B. Sequence conserved for subcellular localization. Protein Sci. 2002 ;11(12):2836-47.

Chen CPeter, Rost B. State-of-the-art in membrane protein prediction. Appl Bioinformatics. 2002 ;1(1):21-35.

Liu J, Rost B. Target space for structural genomics revisited. Bioinformatics. 2002 ;18(7):922-33.

Chen CPeter, Kernytsky A, Rost B. Transmembrane helix predictions revisited. Protein Sci. 2002 ;11(12):2774-91.

2001

Fischer D, Elofsson A, Rychlewski L, Pazos F, Valencia A, Rost B, Ortiz AR, Dunbrack, Jr. RL. CAFASP2: the second critical assessment of fully automated structure prediction methods. Proteins. 2001 ;Suppl 5:171-83.

Liu J, Rost B. Comparing function and structure between entire proteomes. Protein Sci. 2001 ;10:1970-9.

Eyrich VA, Marti-Renom MA, Przybylski D, Madhusudhan MS, Fiser A, Pazos F, Valencia A, Sali A, Rost B. EVA: continuous automatic evaluation of protein structure prediction servers. Bioinformatics. 2001 ;17:1242-3.

Rost B, Eyrich VA. EVA: large-scale analysis of secondary structure prediction. Proteins. 2001 ;Suppl 5:192-9.

Hauer K, Rost B, Rutschle K, Opitz H, Specht N, Bartsch P, Oster P, Schlierf G. Exercise training for rehabilitation and secondary prevention of falls in geriatric patients with a history of injurious falls. J Am Geriatr Soc. 2001 ;49:10-20.

Hellwig P, Rost B, Mantele W. Redox dependent conformational changes in the mixed valence form of the cytochrome c oxidase from p. The reorganization of glutamic acid 278 is coupled to the electron transfer from/to heme a and the binuclear center. denitrificans. Spectrochim Acta A Mol Biomol Spectrosc. 2001 ;57A:1123-31.

Rost B. Review: protein secondary structure prediction continues to rise. J Struct Biol. 2001 ;134:204-18.

2000

Hediger C, Rost B, Itin P. Cutaneous manifestations in anorexia nervosa. Schweiz Med Wochenschr. 2000 ;130:565-75.

Cokol M, Nair R, Rost B. Finding nuclear localization signals. EMBO Rep. 2000 ;1:411-5.

Riebesell U, Zondervan I, Rost B, Tortell PD, Zeebe RE, Morel FM. Reduced calcification of marine plankton in response to increased atmospheric CO2. Nature. 2000 ;407:364-7.

Rost B, Sander C. Third generation prediction of secondary structures. Methods Mol Biol. 2000 ;143:71-95.

1999

Fischer D, Barret C, Bryson K, Elofsson A, Godzik A, Jones D, Karplus KJ, Kelley LA, MacCallum RM, Pawowski K, et al. CAFASP-1: critical assessment of fully automated structure prediction methods. Proteins. 1999 ;Suppl 3:209-17.

Oster P, Rost BM, Velte U, Schlierf G. Comparative nutrition evaluation with the Mini Nutritional Assessment and the Nutritional Risk Assessment Scale. Nestle Nutr Workshop Ser Clin Perform Programme. 1999 ;1:35-9; discussion 39-40.

Olmea O, Rost B, Valencia A. Effective use of sequence correlation and conservation in fold recognition. J Mol Biol. 1999 ;293:1221-39.

Gupta RK, Anderson R, Cecchini D, Rost B, Xu J, Gendreau K, Saroff DL, Marchant C, Siber GR. Evaluation of a guinea pig model to assess interference in the immunogenicity of different components of a combination vaccine comprising diphtheria, tetanus and acellular pertussis (DTaP) vaccine and haemophilus influenzae type b capsular polysaccharide . Biologicals. 1999 ;27:167-76.

Roser W, Bubl R, Buergin D, Seelig J, Radue EW, Rost B. Metabolic changes in the brain of patients with anorexia and bulimia nervosa as detected by proton magnetic resonance spectroscopy. Int J Eat Disord. 1999 ;26:119-36.

Zemla A, Venclovas C, Fidelis K, Rost B. A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment. Proteins. 1999 ;34:220-3.

Rost B, Roser W, Bubl R, Radue EW, Buergin D. MRS of the brain in patients with anorexia or bulimia nervosa. Hosp Med. 1999 ;60:474-6.

Pages