Publications

Found 28 results
Filters: Author is Liu, Jinfeng  [Clear All Filters]
2012
Snyder DA, Aramini JM, Yu B, Huang YJ, Xiao R, Cort JR, Shastry R, Ma L-C, Liu J, Rost B, et al. Solution NMR structure of the ribosomal protein RP-L35Ae from Pyrococcus furiosus. Proteins. 2012 ;80(7):1901-6.
2009
Liu G, Forouhar F, Eletsky A, Atreya HS, Aramini JM, Xiao R, Huang YJ, Abashidze M, Seetharaman J, Liu J, et al. NMR and X-RAY structures of human E2-like ubiquitin-fold modifier conjugating enzyme 1 (UFC1) reveal structural and functional conservation in the metazoan UFM1-UBA5-UFC1 ubiquination pathway. J Struct Funct Genomics. 2009 ;10(2):127-36.
Nair R, Liu J, Soong T-T, Acton TB, Everett JK, Kouranov A, Fiser A, Godzik A, Jaroszewski L, Orengo C, et al. Structural genomics is the largest contributor of novel structural leverage. J Struct Funct Genomics. 2009 ;10(2):181-91.
W Price N, Chen Y, Handelman SK, Neely H, Manor P, Karlin R, Nair R, Liu J, Baran M, Everett J, et al. Understanding the physical properties that control protein crystallization by analysis of large-scale experimental data. Nat Biotechnol. 2009 ;27(1):51-7.
2008
Aramini JM, Sharma S, Huang YJ, Swapna GVT, Ho CKent, Shetty K, Cunningham K, Ma L-C, Zhao L, Owens LA, et al. Solution NMR structure of the SOS response protein YnzC from Bacillus subtilis. Proteins. 2008 ;72(1):526-30.
2007
Punta M, Forrest LR, Bigelow H, Kernytsky A, Liu J, Rost B. Membrane protein prediction methods. Methods. 2007 ;41(4):460-74.
Schlessinger A, Liu J, Rost B. Natively unstructured loops differ from other loops. PLoS Comput Biol. 2007 ;3(7):e140.
Liu J, Montelione GT, Rost B. Novel leverage of structural genomics. Nat Biotechnol. 2007 ;25(8):849-51.
Aramini JM, Huang YJ, Swapna GVT, Cort JR, Rajan PK, Xiao R, Shastry R, Acton TB, Liu J, Rost B, et al. Solution NMR structure of Escherichia coli ytfP expands the structural coverage of the UPF0131 protein domain family. Proteins. 2007 ;68(3):789-95.
2006
Liu J, Gough J, Rost B. Distinguishing protein-coding from non-coding RNAs through support vector machines. PLoS Genet. 2006 ;2(4):e29.
2005
Benach J, Edstrom WC, Lee I, Das K, Cooper B, Xiao R, Liu J, Rost B, Acton TB, Montelione GT, et al. The 2.35 A structure of the TenA homolog from Pyrococcus furiosus supports an enzymatic function in thiamine metabolism. Acta Crystallogr D Biol Crystallogr. 2005 ;61(Pt 5):589-98.
Snyder DA, Chen Y, Denissova NG, Acton T, Aramini JM, Ciano M, Karlin R, Liu J, Manor P, Rajan PA, et al. Comparisons of NMR spectral quality and success in crystallization demonstrate that NMR and X-ray crystallography are complementary methods for small protein structure determination. J Am Chem Soc. 2005 ;127(47):16505-11.
Powers R, Mirkovic N, Goldsmith-Fischman S, Acton TB, Chiang Y, Huang YJ, Ma L, Rajan PK, Cort JR, Kennedy MA, et al. Solution structure of Archaeglobus fulgidis peptidyl-tRNA hydrolase (Pth2) provides evidence for an extensive conserved family of Pth2 enzymes in archea, bacteria, and eukaryotes. Protein Sci. 2005 ;14(11):2849-61.
2004
Powers R, Acton TB, Chiang Y, Rajan PK, Cort JR, Kennedy MA, Liu J, Ma L, Rost B, Montelione GT. (1)H, (13)C and (15)N assignments for the Archaeglobus fulgidis protein AF2095. J Biomol NMR. 2004 ;30(1):107-8.
Liu J, Hegyi H, Acton TB, Montelione GT, Rost B. Automatic target selection for structural genomics on eukaryotes. Proteins. 2004 ;56(2):188-200.
Liu J, Rost B. CHOP: parsing proteins into structural domains. Nucleic Acids Res. 2004 ;32(Web Server issue):W569-71.
Liu J, Rost B. CHOP proteins into structural domain-like fragments. Proteins. 2004 ;55(3):678-88.
Bigelow HR, Petrey DS, Liu J, Przybylski D, Rost B. Predicting transmembrane beta-barrels in proteomes. Nucleic Acids Res. 2004 ;32(8):2566-77.
Rost B, Yachdav G, Liu J. The PredictProtein server. Nucleic Acids Res. 2004 ;32(Web Server issue):W321-6.
Wunderlich Z, Acton TB, Liu J, Kornhaber G, Everett J, Carter P, Lan N, Echols N, Gerstein M, Rost B, et al. The protein target list of the Northeast Structural Genomics Consortium. Proteins. 2004 ;56(2):181-7.
Liu J, Rost B. Sequence-based prediction of protein domains. Nucleic Acids Res. 2004 ;32(12):3522-30.
2003
Liu J, Rost B. Domains, motifs and clusters in the protein universe. Curr Opin Chem Biol. 2003 ;7(1):5-11.
Liu J, Rost B. NORSp: Predictions of long regions without regular secondary structure. Nucleic Acids Res. 2003 ;31(13):3833-5.
Carter P, Liu J, Rost B. PEP: Predictions for Entire Proteomes. Nucleic Acids Res. 2003 ;31(1):410-3.
Rost B, Liu J. The PredictProtein server. Nucleic Acids Res. 2003 ;31(13):3300-4.
Aramini JM, Huang YJ, Cort JR, Goldsmith-Fischman S, Xiao R, Shih L-Y, Ho CK, Liu J, Rost B, Honig B, et al. Solution NMR structure of the 30S ribosomal protein S28E from Pyrococcus horikoshii. Protein Sci. 2003 ;12(12):2823-30.
2002
Liu J, Tan H, Rost B. Loopy proteins appear conserved in evolution. J Mol Biol. 2002 ;322(1):53-64.
Liu J, Rost B. Target space for structural genomics revisited. Bioinformatics. 2002 ;18(7):922-33.