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Proteins
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2005
Moult J
,
Fidelis K
,
Rost B
,
Hubbard T
,
Tramontano A
.
Critical assessment of methods of protein structure prediction (CASP)--round 6.
Proteins. 2005 ;61 Suppl 7:3-7.
Nair R
,
Rost B
.
Mimicking cellular sorting improves prediction of subcellular localization.
J Mol Biol. 2005 ;348(1):85-100.
Punta M
,
Rost B
.
PROFcon: novel prediction of long-range contacts.
Bioinformatics. 2005 ;21(13):2960-8.
Schlessinger A
,
Rost B
.
Protein flexibility and rigidity predicted from sequence.
Proteins. 2005 ;61(1):115-26.
Punta M
,
Rost B
.
Protein folding rates estimated from contact predictions.
J Mol Biol. 2005 ;348(3):507-12.
2004
Liu J
,
Hegyi H
,
Acton TB
,
Montelione GT
,
Rost B
.
Automatic target selection for structural genomics on eukaryotes.
Proteins. 2004 ;56(2):188-200.
Wrzeszczynski KO
,
Rost B
.
Cataloging proteins in cell cycle control.
Methods Mol Biol. 2004 ;241:219-33.
Liu J
,
Rost B
.
CHOP proteins into structural domain-like fragments.
Proteins. 2004 ;55(3):678-88.
Przybylski D
,
Rost B
.
Improving fold recognition without folds.
J Mol Biol. 2004 ;341(1):255-69.
Nair R
,
Rost B
.
LOCnet and LOCtarget: sub-cellular localization for structural genomics targets.
Nucleic Acids Res. 2004 ;32(Web Server issue):W517-21.
Rost B
,
Yachdav G
,
Liu J
.
The PredictProtein server.
Nucleic Acids Res. 2004 ;32(Web Server issue):W321-6.
Mika S
,
Rost B
.
Protein names precisely peeled off free text.
Bioinformatics. 2004 ;20 Suppl 1:i241-7.
Wunderlich Z
,
Acton TB
,
Liu J
,
Kornhaber G
,
Everett J
,
Carter P
,
Lan N
,
Echols N
,
Gerstein M
,
Rost B
, et al.
The protein target list of the Northeast Structural Genomics Consortium.
Proteins. 2004 ;56(2):181-7.
2003
Ofran Y
,
Rost B
.
Analysing six types of protein-protein interfaces.
J Mol Biol. 2003 ;325(2):377-87.
Nair R
,
Rost B
.
Better prediction of sub-cellular localization by combining evolutionary and structural information.
Proteins. 2003 ;53(4):917-30.
Eyrich VA
,
Przybylski D
,
Y Y Koh I
,
Graña O
,
Pazos F
,
Valencia A
,
Rost B
.
CAFASP3 in the spotlight of EVA.
Proteins. 2003 ;53 Suppl 6:548-60.
Liu J
,
Rost B
.
Domains, motifs and clusters in the protein universe.
Curr Opin Chem Biol. 2003 ;7(1):5-11.
Carter P
,
Andersen CAF
,
Rost B
.
DSSPcont: Continuous secondary structure assignments for proteins.
Nucleic Acids Res. 2003 ;31(13):3293-5.
Y Y Koh I
,
Eyrich VA
,
Marti-Renom MA
,
Przybylski D
,
Madhusudhan MS
,
Eswar N
,
Graña O
,
Pazos F
,
Valencia A
,
Sali A
, et al.
EVA: Evaluation of protein structure prediction servers.
Nucleic Acids Res. 2003 ;31(13):3311-5.
Nair R
,
Rost B
.
LOC3D: annotate sub-cellular localization for protein structures.
Nucleic Acids Res. 2003 ;31(13):3337-40.
Eyrich VA
,
Rost B
.
META-PP: single interface to crucial prediction servers.
Nucleic Acids Res. 2003 ;31(13):3308-10.
Liu J
,
Rost B
.
NORSp: Predictions of long regions without regular secondary structure.
Nucleic Acids Res. 2003 ;31(13):3833-5.
Carter P
,
Liu J
,
Rost B
.
PEP: Predictions for Entire Proteomes.
Nucleic Acids Res. 2003 ;31(1):410-3.
Rost B
.
Prediction in 1D: secondary structure, membrane helices, and accessibility.
Methods Biochem Anal. 2003 ;44:559-87.
Rost B
,
Liu J
.
The PredictProtein server.
Nucleic Acids Res. 2003 ;31(13):3300-4.
Andersen CAF
,
Rost B
.
Secondary structure assignment.
Methods Biochem Anal. 2003 ;44:341-63.
Mika S
,
Rost B
.
UniqueProt: Creating representative protein sequence sets.
Nucleic Acids Res. 2003 ;31(13):3789-91.
2002
Rost B
,
Honig B
,
Valencia A
.
Bioinformatics in structural genomics.
Bioinformatics. 2002 ;18(7):897-8.
Andersen CAF
,
Palmer AG
,
Brunak S
,
Rost B
.
Continuum secondary structure captures protein flexibility.
Structure. 2002 ;10(2):175-84.
Rost B
.
Did evolution leap to create the protein universe?
. Curr Opin Struct Biol. 2002 ;12(3):409-16.
Pollastri G
,
Przybylski D
,
Rost B
,
Baldi P
.
Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles.
Proteins. 2002 ;47(2):228-35.
Nair R
,
Rost B
.
Inferring sub-cellular localization through automated lexical analysis.
Bioinformatics. 2002 ;18 Suppl 1:S78-86.
Liu J
,
Tan H
,
Rost B
.
Loopy proteins appear conserved in evolution.
J Mol Biol. 2002 ;322(1):53-64.
Marti-Renom MA
,
Madhusudhan MS
,
Fiser A
,
Rost B
,
Sali A
.
Reliability of assessment of protein structure prediction methods.
Structure. 2002 ;10(3):435-40.
Nair R
,
Rost B
.
Sequence conserved for subcellular localization.
Protein Sci. 2002 ;11(12):2836-47.
Liu J
,
Rost B
.
Target space for structural genomics revisited.
Bioinformatics. 2002 ;18(7):922-33.
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