Found 211 results
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Feiglin A, Ashkenazi S, Schlessinger A, Rost B, Ofran Y. Co-expression and co-localization of hub proteins and their partners are encoded in protein sequence. Mol Biosyst. 2014 ;10(4):787-94.
Kaján L, Hopf TA, Kalaš M, Marks DS, Rost B. FreeContact: fast and free software for protein contact prediction from residue co-evolution. BMC Bioinformatics. 2014 ;15:85.
Yachdav G, Hecht M, Pasmanik-Chor M, Yeheskel A, Rost B. HeatMapViewer: interactive display of 2D data in biology. F1000Res. 2014 ;3:48.
Rost B. ISCB: past-present perspective for the International Society for Computational Biology. Bioinformatics. 2014 ;30(1):143-5.
Goldberg T, Hecht M, Hamp T, Karl T, Yachdav G, Ahmed N, Altermann U, Angerer P, Ansorge S, Balasz K, et al. LocTree3 prediction of localization. Nucleic Acids Res. 2014 ;42(Web Server issue):W350-5.
Yachdav G, Kloppmann E, Kaján L, Hecht M, Goldberg T, Hamp T, Hönigschmid P, Schafferhans A, Roos M, Bernhofer M, et al. PredictProtein--an open resource for online prediction of protein structural and functional features. Nucleic Acids Res. 2014 ;42(Web Server issue):W337-43.
Chang Y, Bruni R, Kloss B, Assur Z, Kloppmann E, Rost B, Hendrickson WA, Liu Q. Structural basis for a pH-sensitive calcium leak across membranes. Science. 2014 ;344(6188):1131-5.
Yang T, Liu Q, Kloss B, Bruni R, Kalathur RC, Guo Y, Kloppmann E, Rost B, Colecraft HM, Hendrickson WA. Structure and selectivity in bestrophin ion channels. Science. 2014 ;346(6207):355-9.
Cejuela JMiguel, McQuilton P, Ponting L, Marygold SJ, Stefancsik R, Millburn GH, Rost B. tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles. Database (Oxford). 2014 ;2014:bau033.
Schafferhans A, Rost B. Taking structure searches to the next dimension. Structure. 2014 ;22(7):938-9.
Hamp T, Goldberg T, Rost B. Accelerating the Original Profile Kernel. PLoS One. 2013 ;8(6):e68459.
Kaján L, Yachdav G, Vicedo E, Steinegger M, Mirdita M, Angermüller C, Böhm A, Domke S, Ertl J, Mertes C, et al. Cloud prediction of protein structure and function with PredictProtein for Debian. Biomed Res Int. 2013 ;2013:398968.
Pieper U, Schlessinger A, Kloppmann E, Chang GA, Chou JJ, Dumont ME, Fox BG, Fromme P, Hendrickson WA, Malkowski MG, et al. Coordinating the impact of structural genomics on the human α-helical transmembrane proteome. Nat Struct Mol Biol. 2013 ;20(2):135-8.
Mistry J, Kloppmann E, Rost B, Punta M. An estimated 5% of new protein structures solved today represent a new Pfam family. Acta Crystallogr D Biol Crystallogr. 2013 ;69(Pt 11):2186-93.
Hamp T, Kassner R, Seemayer S, Vicedo E, Schaefer C, Achten D, Auer F, Boehm A, Braun T, Hecht M, et al. Homology-based inference sets the bar high for protein function prediction. BMC Bioinformatics. 2013 ;14 Suppl 3:S7.
Bateman A, Kelso J, Mietchen D, Macintyre G, Di Domenico T, Abeel T, Logan DW, Radivojac P, Rost B. ISCB computational biology Wikipedia competition. PLoS Comput Biol. 2013 ;9(9):e1003242.
Rost B. ISCB: past-present perspective for the International Society for Computational Biology. Bioinformatics. 2013 ;29(24):3243-5.
Radivojac P, Clark WT, Oron TRonnen, Schnoes AM, Wittkop T, Sokolov A, Graim K, Funk C, Verspoor K, Ben-Hur A, et al. A large-scale evaluation of computational protein function prediction. Nat Methods. 2013 ;10(3):221-7.
Bromberg Y, Kahn PC, Rost B. Neutral and weakly nonneutral sequence variants may define individuality. Proc Natl Acad Sci U S A. 2013 ;110(35):14255-60.
Hecht M, Bromberg Y, Rost B. News from the protein mutability landscape. J Mol Biol. 2013 ;425(21):3937-48.
Hamp T, Rost B. Alternative protein-protein interfaces are frequent exceptions. PLoS Comput Biol. 2012 ;8(8):e1002623.
Schaefer C, Bromberg Y, Achten D, Rost B. Disease-related mutations predicted to impact protein function. BMC Genomics. 2012 ;13 Suppl 4:S11.
Goldberg T, Hamp T, Rost B. LocTree2 predicts localization for all domains of life. Bioinformatics. 2012 ;28(18):i458-i465.
Wu Y, Punta M, Xiao R, Acton TB, Sathyamoorthy B, Dey F, Fischer M, Skerra A, Rost B, Montelione GT, et al. NMR structure of lipoprotein YxeF from Bacillus subtilis reveals a calycin fold and distant homology with the lipocalin Blc from Escherichia coli. PLoS One. 2012 ;7(6):e37404.
Rost B, Gaasterland T, Lengauer T, Linial M, Markel S, McKay BJMorrison, Schneider R, Horton P, Kelso J. Paving the future: finding suitable ISMB venues. Bioinformatics. 2012 ;28(19):2556-9.
Schaefer C, Rost B. Predict impact of single amino acid change upon protein structure. BMC Genomics. 2012 ;13 Suppl 4:S4.
Schaefer C, Meier A, Rost B, Bromberg Y. SNPdbe: constructing an nsSNP functional impacts database. Bioinformatics. 2012 ;28(4):601-2.
Snyder DA, Aramini JM, Yu B, Huang YJ, Xiao R, Cort JR, Shastry R, Ma L-C, Liu J, Rost B, et al. Solution NMR structure of the ribosomal protein RP-L35Ae from Pyrococcus furiosus. Proteins. 2012 ;80(7):1901-6.
Kloppmann E, Punta M, Rost B. Structural genomics plucks high-hanging membrane proteins. Curr Opin Struct Biol. 2012 ;22(3):326-32.
Hopf TA, Colwell LJ, Sheridan R, Rost B, Sander C, Marks DS. Three-dimensional structures of membrane proteins from genomic sequencing. Cell. 2012 ;149(7):1607-21.
Shi W, Punta M, Bohon J, J Sauder M, D'Mello R, Sullivan M, Toomey J, Abel D, Lippi M, Passerini A, et al. Characterization of metalloproteins by high-throughput X-ray absorption spectroscopy. Genome Res. 2011 ;21(6):898-907.
Offman MN, Krol M, Rost B, Silman I, Sussman JL, Futerman AH. Comparison of a molecular dynamics model with the X-ray structure of the N370S acid-beta-glucosidase mutant that causes Gaucher disease. Protein Eng Des Sel. 2011 ;24(10):773-5.
Cao Y, Jin X, Levin EJ, Huang H, Zong Y, Quick M, Weng J, Pan Y, Love J, Punta M, et al. Crystal structure of a phosphorylation-coupled saccharide transporter. Nature. 2011 ;473(7345):50-4.
Cao Y, Jin X, Huang H, Derebe MGetahun, Levin EJ, Kabaleeswaran V, Pan Y, Punta M, Love J, Weng J, et al. Crystal structure of a potassium ion transporter, TrkH. Nature. 2011 ;471(7338):336-40.
Schönbach C, Tan TWee, Kelso J, Rost B, Nathan S, Ranganathan S. InCoB celebrates its tenth anniversary as first joint conference with ISCB-Asia. BMC Genomics. 2011 ;12 Suppl 3:S1.
Lathrop RH, Rost B. ISCB Public Policy Statement on Open Access to Scientific and Technical Research Literature. PLoS Comput Biol. 2011 ;7(2):e1002014.
Lathrop RH, Rost B. ISCB public policy statement on open access to scientific and technical research literature. Bioinformatics. 2011 ;27(3):291-4.
W Price N, Handelman SK, Everett JK, Tong SN, Bracic A, Luff JD, Naumov V, Acton T, Manor P, Xiao R, et al. Large-scale experimental studies show unexpected amino acid effects on protein expression and solubility in vivo in E. coli. Microb Inform Exp. 2011 ;1(1):6.
Rastogi S, Rost B. LocDB: experimental annotations of localization for Homo sapiens and Arabidopsis thaliana. Nucleic Acids Res. 2011 ;39(Database issue):D230-4.
Zimprich A, Benet-Pagès A, Struhal W, Graf E, Eck SH, Offman MN, Haubenberger D, Spielberger S, Schulte EC, Lichtner P, et al. A mutation in VPS35, encoding a subunit of the retromer complex, causes late-onset Parkinson disease. Am J Hum Genet. 2011 ;89(1):168-75.
Schlessinger A, Schaefer C, Vicedo E, Schmidberger M, Punta M, Rost B. Protein disorder--a breakthrough invention of evolution?. Curr Opin Struct Biol. 2011 ;21(3):412-8.
Yang Y, Ramelot TA, Cort JR, Wang D, Ciccosanti C, Hamilton K, Nair R, Rost B, Acton TB, Xiao R, et al. Solution NMR structure of photosystem II reaction center protein Psb28 from Synechocystis sp. Strain PCC 6803. Proteins. 2011 ;79(1):340-4.
Ranganathan S, Schönbach C, Kelso J, Rost B, Nathan S, Tan TWee. Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference. BMC Bioinformatics. 2011 ;12 Suppl 13:S1.