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Found 13 results
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Heinzinger, Michael
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2021
Littmann M
,
Bordin N
,
Heinzinger M
,
Schütze K
,
Dallago C
,
Orengo C
,
Rost B
.
Clustering FunFams using sequence embeddings improves EC purity.
Bioinformatics. 2021 .
Littmann M
,
Heinzinger M
,
Dallago C
,
Olenyi T
,
Rost B
.
Embeddings from deep learning transfer GO annotations beyond homology.
Sci Rep. 2021 ;11(1):1160.
Marquet C
,
Heinzinger M
,
Olenyi T
,
Dallago C
,
Erckert K
,
Bernhofer M
,
Nechaev D
,
Rost B
.
Embeddings from protein language models predict conservation and variant effects.
Hum Genet. 2021 .
Dallago C
,
Schütze K
,
Heinzinger M
,
Olenyi T
,
Littmann M
,
Lu AX
,
Yang KK
,
Min S
,
Yoon S
,
Morton JT
, et al.
Learned Embeddings from Deep Learning to Visualize and Predict Protein Sets.
Curr Protoc. 2021 ;1(5):e113.
Bernhofer M
,
Dallago C
,
Karl T
,
Satagopam V
,
Heinzinger M
,
Littmann M
,
Olenyi T
,
Qiu J
,
Schütze K
,
Yachdav G
, et al.
PredictProtein - Predicting Protein Structure and Function for 29 Years.
Nucleic Acids Res. 2021 ;49(W1):W535-W540.
Littmann M
,
Heinzinger M
,
Dallago C
,
Weissenow K
,
Rost B
.
Protein embeddings and deep learning predict binding residues for various ligand classes.
Sci Rep. 2021 ;11(1):23916.
Heinzinger M
,
Dallago C
,
Rost B
.
Protein matchmaking through representation learning.
Cell Syst. 2021 ;12(10):948-950.
Elnaggar A
,
Heinzinger M
,
Dallago C
,
Rehawi G
,
Yu W
,
Jones L
,
Gibbs T
,
Feher T
,
Angerer C
,
Steinegger M
, et al.
ProtTrans: Towards Cracking the Language of Lifes Code Through Self-Supervised Deep Learning and High Performance Computing.
IEEE Trans Pattern Anal Mach Intell. 2021 ;PP.
2020
Zaucha J
,
Heinzinger M
,
Tarnovskaya S
,
Rost B
,
Frishman D
.
Family-specific analysis of variant pathogenicity prediction tools.
NAR Genom Bioinform. 2020 ;2(2):lqaa014.
Zaucha J
,
Heinzinger M
,
Kulandaisamy A
,
Kataka E
,
Salvádor ÓLlorian
,
Popov P
,
Rost B
,
M Gromiha M
,
Zhorov BS
,
Frishman D
.
Mutations in transmembrane proteins: diseases, evolutionary insights, prediction and comparison with globular proteins.
Brief Bioinform. 2020 .
Qiu J
,
Bernhofer M
,
Heinzinger M
,
Kemper S
,
Norambuena T
,
Melo F
,
Rost B
.
ProNA2020 predicts protein-DNA, protein-RNA, and protein-protein binding proteins and residues from sequence.
J Mol Biol. 2020 ;432(7):2428-2443.
2019
Heinzinger M
,
Elnaggar A
,
Wang Y
,
Dallago C
,
Nechaev D
,
Matthes F
,
Rost B
.
Modeling aspects of the language of life through transfer-learning protein sequences.
BMC Bioinformatics. 2019 ;20(1):723.
2018
Schafferhans A
,
O'Donoghue SI
,
Heinzinger M
,
Rost B
.
Dark Proteins Important for Cellular Function.
Proteomics. 2018 ;18(21-22):e1800227.