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Rost, Burkhard
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2021
Bernhofer M
,
Dallago C
,
Karl T
,
Satagopam V
,
Heinzinger M
,
Littmann M
,
Olenyi T
,
Qiu J
,
Schütze K
,
Yachdav G
, et al.
PredictProtein - Predicting Protein Structure and Function for 29 Years.
Nucleic Acids Res. 2021 ;49(W1):W535-W540.
2020
Qiu J
,
Bernhofer M
,
Heinzinger M
,
Kemper S
,
Norambuena T
,
Melo F
,
Rost B
.
ProNA2020 predicts protein-DNA, protein-RNA, and protein-protein binding proteins and residues from sequence.
J Mol Biol. 2020 ;432(7):2428-2443.
Reeb J
,
Wirth T
,
Rost B
.
Variant effect predictions capture some aspects of deep mutational scanning experiments.
BMC Bioinformatics. 2020 ;21(1):107.
2014
Kaján L
,
Hopf TA
,
Kalaš M
,
Marks DS
,
Rost B
.
FreeContact: fast and free software for protein contact prediction from residue co-evolution.
BMC Bioinformatics. 2014 ;15:85.
Goldberg T
,
Hecht M
,
Hamp T
,
Karl T
,
Yachdav G
,
Ahmed N
,
Altermann U
,
Angerer P
,
Ansorge S
,
Balasz K
, et al.
LocTree3 prediction of localization.
Nucleic Acids Res. 2014 ;42(Web Server issue):W350-5.
Yachdav G
,
Kloppmann E
,
Kaján L
,
Hecht M
,
Goldberg T
,
Hamp T
,
Hönigschmid P
,
Schafferhans A
,
Roos M
,
Bernhofer M
, et al.
PredictProtein--an open resource for online prediction of protein structural and functional features.
Nucleic Acids Res. 2014 ;42(Web Server issue):W337-43.
Cejuela JMiguel
,
McQuilton P
,
Ponting L
,
Marygold SJ
,
Stefancsik R
,
Millburn GH
,
Rost B
.
tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles.
Database (Oxford). 2014 ;2014:bau033.
2013
Rost B
.
ISCB: past-present perspective for the International Society for Computational Biology.
Bioinformatics. 2013 ;29(24):3243-5.
2011
Shi W
,
Punta M
,
Bohon J
,
J Sauder M
,
D'Mello R
,
Sullivan M
,
Toomey J
,
Abel D
,
Lippi M
,
Passerini A
, et al.
Characterization of metalloproteins by high-throughput X-ray absorption spectroscopy.
Genome Res. 2011 ;21(6):898-907.
Schönbach C
,
Tan TWee
,
Kelso J
,
Rost B
,
Nathan S
,
Ranganathan S
.
InCoB celebrates its tenth anniversary as first joint conference with ISCB-Asia.
BMC Genomics. 2011 ;12 Suppl 3:S1.
Ranganathan S
,
Schönbach C
,
Kelso J
,
Rost B
,
Nathan S
,
Tan TWee
.
Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference.
BMC Bioinformatics. 2011 ;12 Suppl 13:S1.
2010
Wainreb G
,
Ashkenazy H
,
Bromberg Y
,
Starovolsky-Shitrit A
,
Haliloglu T
,
Ruppin E
,
Avraham KB
,
Rost B
,
Ben-Tal N
.
MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data.
Nucleic Acids Res. 2010 ;38(Web Server issue):W523-8.
2009
Galea CA
,
High AA
,
Obenauer JC
,
Mishra A
,
Park C-G
,
Punta M
,
Schlessinger A
,
Ma J
,
Rost B
,
Slaughter CA
, et al.
Large-scale analysis of thermostable, mammalian proteins provides insights into the intrinsically disordered proteome.
J Proteome Res. 2009 ;8(1):211-26.
Bromberg Y
,
Yachdav G
,
Ofran Y
,
Schneider R
,
Rost B
.
New in protein structure and function annotation: hotspots, single nucleotide polymorphisms and the 'Deep Web'.
Curr Opin Drug Discov Devel. 2009 ;12(3):408-19.
Bigelow H
,
Rost B
.
Online tools for predicting integral membrane proteins.
Methods Mol Biol. 2009 ;528:3-23.
2008
Bromberg Y
,
Yachdav G
,
Rost B
.
SNAP predicts effect of mutations on protein function.
Bioinformatics. 2008 ;24(20):2397-8.
2007
Przybylski D
,
Rost B
.
Consensus sequences improve PSI-BLAST through mimicking profile-profile alignments.
Nucleic Acids Res. 2007 ;35(7):2238-46.
2006
Schlessinger A
,
Yachdav G
,
Rost B
.
PROFbval: predict flexible and rigid residues in proteins.
Bioinformatics. 2006 ;22(7):891-3.
Bigelow H
,
Rost B
.
PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins.
Nucleic Acids Res. 2006 ;34(Web Server issue):W186-8.
2005
Graña O
,
Baker D
,
MacCallum RM
,
Meiler J
,
Punta M
,
Rost B
,
Tress ML
,
Valencia A
.
CASP6 assessment of contact prediction.
Proteins. 2005 ;61 Suppl 7:214-24.
Graña O
,
Eyrich VA
,
Pazos F
,
Rost B
,
Valencia A
.
EVAcon: a protein contact prediction evaluation service.
Nucleic Acids Res. 2005 ;33(Web Server issue):W347-51.
Punta M
,
Rost B
.
PROFcon: novel prediction of long-range contacts.
Bioinformatics. 2005 ;21(13):2960-8.
2004
Liu J
,
Rost B
.
CHOP: parsing proteins into structural domains.
Nucleic Acids Res. 2004 ;32(Web Server issue):W569-71.
Nair R
,
Rost B
.
LOCnet and LOCtarget: sub-cellular localization for structural genomics targets.
Nucleic Acids Res. 2004 ;32(Web Server issue):W517-21.
Mika S
,
Rost B
.
NLProt: extracting protein names and sequences from papers.
Nucleic Acids Res. 2004 ;32(Web Server issue):W634-7.
Rost B
,
Yachdav G
,
Liu J
.
The PredictProtein server.
Nucleic Acids Res. 2004 ;32(Web Server issue):W321-6.
Wunderlich Z
,
Acton TB
,
Liu J
,
Kornhaber G
,
Everett J
,
Carter P
,
Lan N
,
Echols N
,
Gerstein M
,
Rost B
, et al.
The protein target list of the Northeast Structural Genomics Consortium.
Proteins. 2004 ;56(2):181-7.
2003
Carter P
,
Andersen CAF
,
Rost B
.
DSSPcont: Continuous secondary structure assignments for proteins.
Nucleic Acids Res. 2003 ;31(13):3293-5.
Liu J
,
Rost B
.
NORSp: Predictions of long regions without regular secondary structure.
Nucleic Acids Res. 2003 ;31(13):3833-5.
Rost B
.
Prediction in 1D: secondary structure, membrane helices, and accessibility.
Methods Biochem Anal. 2003 ;44:559-87.
Andersen CAF
,
Rost B
.
Secondary structure assignment.
Methods Biochem Anal. 2003 ;44:341-63.
Kernytsky A
,
Rost B
.
Static benchmarking of membrane helix predictions.
Nucleic Acids Res. 2003 ;31(13):3642-4.
Mika S
,
Rost B
.
UniqueProt: Creating representative protein sequence sets.
Nucleic Acids Res. 2003 ;31(13):3789-91.
2002
Andersen CAF
,
Palmer AG
,
Brunak S
,
Rost B
.
Continuum secondary structure captures protein flexibility.
Structure. 2002 ;10(2):175-84.
Chen CPeter
,
Rost B
.
State-of-the-art in membrane protein prediction.
Appl Bioinformatics. 2002 ;1(1):21-35.
Chen CPeter
,
Kernytsky A
,
Rost B
.
Transmembrane helix predictions revisited.
Protein Sci. 2002 ;11(12):2774-91.