The PredictProtein server.

TitleThe PredictProtein server.
Publication TypeJournal Article
Year of Publication2004
AuthorsRost, B, Yachdav, G, Liu, J
JournalNucleic Acids Res
Volume32
IssueWeb Server issue
PaginationW321-6
Date Published2004 Jul 1
ISSN1362-4962
KeywordsInternet, Protein Conformation, Protein Structure, Tertiary, Proteins, Sequence Alignment, Sequence Analysis, Protein, Software, User-Computer Interface
Abstract

PredictProtein (http://www.predictprotein.org) is an Internet service for sequence analysis and the prediction of protein structure and function. Users submit protein sequences or alignments; PredictProtein returns multiple sequence alignments, PROSITE sequence motifs, low-complexity regions (SEG), nuclear localization signals, regions lacking regular structure (NORS) and predictions of secondary structure, solvent accessibility, globular regions, transmembrane helices, coiled-coil regions, structural switch regions, disulfide-bonds, sub-cellular localization and functional annotations. Upon request fold recognition by prediction-based threading, CHOP domain assignments, predictions of transmembrane strands and inter-residue contacts are also available. For all services, users can submit their query either by electronic mail or interactively via the World Wide Web.

DOI10.1093/nar/gkh377
Alternate JournalNucleic Acids Res.
PubMed ID15215403
PubMed Central IDPMC441515