Input sequence

 >test sequence
 MARAEEVDGP APGEVLLSPV DGLHNHVIHV ALQEHGWATY AVHPVEAQPA
 PHPGALLHQV EVPAPLDRVD PYPLIALYHH PRLECPPYSL PNTLLSLPPP
 HITRRYIEYY GYVTPQPLLI LYHLPLAQLH PTVLEYLVGP RVRHNNTREP
 EDPVYTLLGR LPSKALPKEV GVCNNLAEPG GPNLIHTNLL PIHVYDRKEG
 GRLHNTMLCI DPADPPRQID IPNLKHRPGP TRNPSRLPTL IAPESKPPFE
 GWMSVGQEA

TEXT output

Result of NORS prediction (Jinfeng Liu & Burkhard Rost)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Jinfeng Liu, Hepan Tan & Burkhard Rost
J. Mol. Biol. (2002) 322: 53-64
________________________________________________________________________________

Sequence length     : 259
Secondary structure : Helix=9.7%, Strand=19.3%, Loop=71.0%

window size         : 70
Structure content cutoff: 12%
Minimum consecutive exposed residues: 10

NORS                 : n=NORS region
Secondary structure  : h=helix, e=strand, l=loop
Transmembrane helix  : m=transmembrane helix
Solvent accessibility: e=exposed, b=buried


NORS region          : 187-259

           .    :    .    :    .    :    .    :    .    5
seq    MARAEEVDGPAPGEVLLSPVDGLHNHVIHVALQEHGWATYAVHPVEAQPA
NORS   ..................................................
SEC    lllleellllllleeeeellllllleeeeeehhhllleeeeelleellll
COILS  ..................................................
HTM    ..................................................
ACC    eeebeebeeebebebbbbebeebeebbbbbbbeeeebbbbbbbebebeeb
           .    :    .    :    .    :    .    :    .    10
seq    PHPGALLHQVEVPAPLDRVDPYPLIALYHHPRLECPPYSLPNTLLSLPPP
NORS   ..................................................
SEC    lllllleeeeelllllllllllleeeeellllllllllllllllllllll
COILS  ..................................................
HTM    ..................................................
ACC    eeeebbbbebebebebeebeebbbbbbbbbeebebeebebeeebbebeee
           .    :    .    :    .    :    .    :    .    15
seq    HITRRYIEYYGYVTPQPLLILYHLPLAQLHPTVLEYLVGPRVRHNNTREP
NORS   ..................................................
SEC    lllhhhhhhhleellhhhhhhhlllhhhllllhhhhhlllllllllllll
COILS  ..................................................
HTM    ..................................................
ACC    ebbeebbebbeebeebbbbbbbbbebbebbeebbeebbebebeeeeeeee
           .    :    .    :    .    :    .    :    .    20
seq    EDPVYTLLGRLPSKALPKEVGVCNNLAEPGGPNLIHTNLLPIHVYDRKEG
NORS   ....................................nnnnnnnnnnnnnn
SEC    llleeeeelllllllllllleellllllllllleeellllleeeeellll
COILS  ..................................................
HTM    ..................................................
ACC    eeebbbbbeebeeeebeeebebbeebeeeeeeebbbbebbbbbbbeeeee
           .    :    .    :    .    :    .    :    .    25
seq    GRLHNTMLCIDPADPPRQIDIPNLKHRPGPTRNPSRLPTLIAPESKPPFE
NORS   nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
SEC    lllllleeelllllllllllllllllllllllllllllllllllllllll
COILS  ..................................................
HTM    ..................................................
ACC    eebbbbbbbbbeeeeeeebebeebeeeeeeeeeeeebeebbbeeeeeebe
           .    :    .    :    .    :    .    :    .    30
seq    GWMSVGQEA
NORS   nnnnnnnnn
SEC    lllllllll
COILS  .........
HTM    .........
ACC    ebbeeeeee
//

HTML output

           .    :    .    :    .    :    .    :    .    5
SEQ    MARAEEVDGPAPGEVLLSPVDGLHNHVIHVALQEHGWATYAVHPVEAQPA
NORS                                                     
SEC        EE       EEEEE       EEEEEEHHH   EEEEE  EE    

COILS                                                    
HTM                                                      
ACC    eee ee eee e e    e ee ee       eeee       e e ee 
           .    :    .    :    .    :    .    :    .    10
SEQ    PHPGALLHQVEVPAPLDRVDPYPLIALYHHPRLECPPYSLPNTLLSLPPP
NORS                                                     
SEC          EEEEE            EEEEE                      

COILS                                                    
HTM                                                      
ACC    eeee    e e e e ee ee         ee e ee e eee  e eee

           .    :    .    :    .    :    .    :    .    15
SEQ    HITRRYIEYYGYVTPQPLLILYHLPLAQLHPTVLEYLVGPRVRHNNTREP
NORS                                                     
SEC       HHHHHHH EE  HHHHHHH   HHH    HHHHH             

COILS                                                    
HTM                                                      
ACC    e  ee  e  ee ee         e  e  ee  ee  e e eeeeeeee

           .    :    .    :    .    :    .    :    .    20
SEQ    EDPVYTLLGRLPSKALPKEVGVCNNLAEPGGPNLIHTNLLPIHVYDRKEG
NORS                                       NNNNNNNNNNNNNN

SEC       EEEEE            EE           EEE     EEEEE    

COILS                                                    
HTM                                                      
ACC    eee     ee eeee eee e  ee eeeeeee    e       eeeee

           .    :    .    :    .    :    .    :    .    25
SEQ    GRLHNTMLCIDPADPPRQIDIPNLKHRPGPTRNPSRLPTLIAPESKPPFE
NORS   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

SEC          EEE                                         
COILS                                                    
HTM                                                      
ACC    ee         eeeeeee e ee eeeeeeeeeeee ee   eeeeee e

           .    :    .    :    .    :    .    :    .    30
SEQ    GWMSVGQEA
NORS   NNNNNNNNN
SEC             
COILS           
HTM             
ACC    e  eeeeee

//