Example Page: Fasta-FileExample Page: Fasta-File
This is what your Fasta-File should look like:
 
>MAT3_RAT 
MSKSFQQSSL GRDSQGHGRD LSAAGIGLLA AATQSLSMPA SLGRMNQGTA 
RLASLMNLGM SSSLNQQGAH SALSSASTSS HNLQSIFNIG SRGPLPLSSQ 
HRGDTDQASN ILASFGLSAR DLDELSRYPE DKITPENLPQ ILLQLKRRRT 
DPNKDASDNS DGQNDENKED YTIPDEYRIG PYQPNVPGGI DYVIPKTGFY 
CKLCSLFYTN EEVAKNTHCS SLPHYQKLKK FLNKLAEERR QKKES 

>AKA8_HUMAN
MDQGYGGYGA WSAGPANTQG AYGTGVASWQ GYENYNYYGA QNTSVTTGAT 
YSYGPASWEA AKANDGGLAA GAPAMHMASY GPEPCTDNSD SLIAKINQRL 
GEPAEDEGPT DTAEAGSDPQ AEQLLEEQVP CGTAHEKGVP KARSEAAEAG 
NGAETMAAEA ESAQTRVAPA PAAADAEVEQ TDAESKDAVP TE 
>VE6_HPV1A
MATPIRTVRQ LSESLCIPYI DVLLPCNFCN YFLSNAEKLL FDHFDLHLVW 
RDNLVFGCCQ GCARTVSLLE FVLYYQESYE VPEIEEILDR PLLQIELRCV 
TCIKKLSVAE KLEVVSNGER VHRVRNRLKA KCSLCRLYAI 
.
.

You can download the above example and submit it to UniqueProt.

Help
Each protein sequence starts with a line beginning with ">". Everything after that line is aminoacids in their one-letter code.
uniqueProt ignores the proteins, being found twice or more times in this list.
It does not matter wether the aminoacids are typed in lower or upper case, if there are whitespaces between them nor how much there are in one row.
You may mark the entries with a newline character (but you don't have to!), like it is done between MAT3_RAT and AKA8_HUMAN.
From here
pppppppppppppppppppp
 
  • use uniqueProt to submit your proteins
  • read the help pages
  • back to the uniqueProt homepage
  • ©2003, Sven Mika & Burkhard Rost