| METHOD about: | ../../doc/explain_methods.html#PX_about_sable2 |
| METHOD url: | SABLE2 |
| METHOD quote: | A Porollo, R Adamczak, M Wagner, and J Meller:: Maximum Feasibility Approach for Consensus Classifiers: Applications to Protein Structure Prediction. CIRAS, 2003 (conference proceedings) |
| TYPE : | sec |
| NPROT : | 159 |
| NWEEKS : | 52 |
| AVE_Q3 : | 76.8 |
| AVE_SOV: | 73.0 |
| NOTE 1 : | here ALL results obtained for sable2 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sec | 2008_04_09 | dssp | psum | 76.8 | 82 | 83 | 65 | 74 | 77 | 72 | 73.0 | 79.2 | 74.7 | 68.8 | 2.4 | 0.37 | 0.38 | 0.36 | 0.71 | 0.63 | 0.57 | 8490.5 | 7.3 | 6.2 |
| sec | 2008_04_09 | dssp | sig | 11.4 | 32 | 32 | 46 | 51 | 18 | 17 | 17.2 | 23.3 | 30.6 | 20.1 | 3.7 | 0.18 | 0.19 | 0.18 | 0.24 | 0.30 | 0.22 | 8432.2 | 7.5 | 7.0 |
| sec | 2008_04_09 | dssp | errsig | 0.90 | 2 | 2 | 3 | 4 | 1 | 1 | 1.3 | 1.8 | 2.4 | 1.5 | 0.30 | 0.01 | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 668.7 | 0.59 | 0.55 |
| Type | Method | Month | Nprot | Average Q3 for month | File with details for month |
|---|---|---|---|---|---|
| sec | sable2 | ALL | 159 | 76.8 | |
| sec | sable2 | 2004_02 | 15 | 77.8 | old/2004_02_sable2.html |
| sec | sable2 | 2004_03 | 13 | 74.6 | old/2004_03_sable2.html |
| sec | sable2 | 2004_04 | 10 | 81.4 | old/2004_04_sable2.html |
| sec | sable2 | 2004_05 | 6 | 69.1 | old/2004_05_sable2.html |
| sec | sable2 | 2004_06 | 7 | 79.2 | old/2004_06_sable2.html |
| sec | sable2 | 2004_07 | 10 | 76.5 | old/2004_07_sable2.html |
| sec | sable2 | 2004_08 | 17 | 82.5 | old/2004_08_sable2.html |
| sec | sable2 | 2004_09 | 12 | 74.1 | old/2004_09_sable2.html |
| sec | sable2 | 2004_10 | 10 | 77.5 | old/2004_10_sable2.html |
| sec | sable2 | 2004_11 | 8 | 67.1 | old/2004_11_sable2.html |
| sec | sable2 | 2004_12 | 1 | 87.6 | old/2004_12_sable2.html |
| sec | sable2 | 2005_02 | 1 | 58.1 | old/2005_02_sable2.html |
| sec | sable2 | 2005_03 | 18 | 78.6 | old/2005_03_sable2.html |
| sec | sable2 | 2005_04 | 12 | 76.2 | old/2005_04_sable2.html |
| sec | sable2 | 2005_05 | 10 | 78.7 | old/2005_05_sable2.html |
| sec | sable2 | 2005_06 | 4 | 77.9 | old/2005_06_sable2.html |
| sec | sable2 | 2005_07 | 10 | 74.3 | old/2005_07_sable2.html |
| sec | sable2 | 2005_08 | 9 | 74.6 | old/2005_08_sable2.html |
| sec | sable2 | 2005_09 | 2 | 78.7 | old/2005_09_sable2.html |
| sec | sable2 | ALL | 159 | 76.8 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |
| sots | standard of truth |
| id | identifier of protein |
| Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
| Q3H%o | correctly predicted helix residues (percentage of helix observed) |
| Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
| Q3E%o | correctly predicted strand residues (percentage of helix observed) |
| Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
| Q3L%o | correctly predicted loop residues (percentage of helix observed) |
| Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
| sov | per segment accuracy (three states) |
| sovH | per segment accuracy for helix residues |
| sovE | per segment accuracy for strand residues |
| sovL | per segment accuracy for non-regular residues |
| BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
| infoO | information index accuracy (percentage of observed) |
| infoP | information index accuracy (percentage of predicted) |
| corrH | Matthews correlation index for helix |
| corrE | Matthews correlation index for strand |
| corrL | Matthews correlation index for loop |
| var | variance over all proteins (1/N-1)*( score(i) - |
| sig | sigma (standard deviation) over all proteins (sqrt[var]) |
| errsig | significant differences ( standard dev / sqrt(Nprot) ) |