| METHOD about: | ../../doc/explain_methods.html#PX_about_profsec |
| METHOD url: | PROFsec |
| METHOD quote: | B Rost:: unpublished. |
| TYPE : | sec |
| NPROT : | 232 |
| NWEEKS : | 70 |
| AVE_Q3 : | 76.6 |
| AVE_SOV: | 74.5 |
| NOTE 1 : | here ALL results obtained for profsec are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sec | 2008_04_09 | dssp | psum | 76.6 | 78 | 85 | 70 | 66 | 77 | 72 | 74.5 | 78.7 | 76.2 | 71.2 | 3.1 | 0.37 | 0.38 | 0.36 | 0.69 | 0.61 | 0.57 | 8275.8 | 7.9 | 6.0 |
| sec | 2008_04_09 | dssp | sig | 10.9 | 32 | 34 | 46 | 44 | 15 | 15 | 15.2 | 23.5 | 28.0 | 17.7 | 5.3 | 0.17 | 0.18 | 0.18 | 0.24 | 0.29 | 0.19 | 8210.9 | 8.3 | 6.9 |
| sec | 2008_04_09 | dssp | errsig | 0.71 | 2 | 2 | 3 | 2 | 0.99 | 1 | 1.0 | 1.5 | 1.8 | 1.1 | 0.35 | 0.01 | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 539.0 | 0.54 | 0.45 |
| Type | Method | Month | Nprot | Average Q3 for month | File with details for month |
|---|---|---|---|---|---|
| sec | profsec | ALL | 232 | 76.6 | |
| sec | profsec | 2001_04 | 1 | 80.9 | old/2001_04_profsec.html |
| sec | profsec | 2003_07 | 5 | 83.0 | old/2003_07_profsec.html |
| sec | profsec | 2003_08 | 5 | 64.2 | old/2003_08_profsec.html |
| sec | profsec | 2003_11 | 22 | 74.8 | old/2003_11_profsec.html |
| sec | profsec | 2003_12 | 19 | 75.2 | old/2003_12_profsec.html |
| sec | profsec | 2004_01 | 11 | 73.8 | old/2004_01_profsec.html |
| sec | profsec | 2004_02 | 19 | 76.2 | old/2004_02_profsec.html |
| sec | profsec | 2004_03 | 13 | 77.1 | old/2004_03_profsec.html |
| sec | profsec | 2004_04 | 8 | 79.5 | old/2004_04_profsec.html |
| sec | profsec | 2004_05 | 6 | 68.8 | old/2004_05_profsec.html |
| sec | profsec | 2004_06 | 7 | 82.8 | old/2004_06_profsec.html |
| sec | profsec | 2004_07 | 10 | 79.2 | old/2004_07_profsec.html |
| sec | profsec | 2004_08 | 17 | 79.2 | old/2004_08_profsec.html |
| sec | profsec | 2004_09 | 12 | 74.8 | old/2004_09_profsec.html |
| sec | profsec | 2004_10 | 10 | 78.9 | old/2004_10_profsec.html |
| sec | profsec | 2004_11 | 8 | 67.9 | old/2004_11_profsec.html |
| sec | profsec | 2004_12 | 1 | 79.8 | old/2004_12_profsec.html |
| sec | profsec | 2005_02 | 1 | 56.5 | old/2005_02_profsec.html |
| sec | profsec | 2005_03 | 18 | 78.5 | old/2005_03_profsec.html |
| sec | profsec | 2005_04 | 11 | 78.3 | old/2005_04_profsec.html |
| sec | profsec | 2005_05 | 12 | 79.9 | old/2005_05_profsec.html |
| sec | profsec | 2005_06 | 4 | 74.6 | old/2005_06_profsec.html |
| sec | profsec | 2005_07 | 11 | 74.2 | old/2005_07_profsec.html |
| sec | profsec | 2005_08 | 17 | 79.2 | old/2005_08_profsec.html |
| sec | profsec | 2005_09 | 3 | 80.0 | old/2005_09_profsec.html |
| sec | profsec | 2006_03 | 3 | 77.1 | old/2006_03_profsec.html |
| sec | profsec | ALL | 232 | 76.6 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |
| sots | standard of truth |
| id | identifier of protein |
| Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
| Q3H%o | correctly predicted helix residues (percentage of helix observed) |
| Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
| Q3E%o | correctly predicted strand residues (percentage of helix observed) |
| Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
| Q3L%o | correctly predicted loop residues (percentage of helix observed) |
| Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
| sov | per segment accuracy (three states) |
| sovH | per segment accuracy for helix residues |
| sovE | per segment accuracy for strand residues |
| sovL | per segment accuracy for non-regular residues |
| BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
| infoO | information index accuracy (percentage of observed) |
| infoP | information index accuracy (percentage of predicted) |
| corrH | Matthews correlation index for helix |
| corrE | Matthews correlation index for strand |
| corrL | Matthews correlation index for loop |
| var | variance over all proteins (1/N-1)*( score(i) - |
| sig | sigma (standard deviation) over all proteins (sqrt[var]) |
| errsig | significant differences ( standard dev / sqrt(Nprot) ) |