| METHOD about: | ../../../doc/explain_methods.html#PX_about_samt99_sec |
| METHOD url: | SAM-T99sec |
| TYPE : | sec |
| NPROT : | 204 |
| NWEEKS : | 63 |
| NOTE 1 : | here ALL results obtained for SAM-T99sec in month 2005_04 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sec | 2005_04 | dssp | ALL_proteins:psum | 77.3 | 86 | 80 | 63 | 74 | 74 | 74 | 74.8 | 82.9 | 74.6 | 68.8 | 3.0 | 0.38 | 0.38 | 0.37 | 0.71 | 0.62 | 0.58 | 8431.3 | 7.3 | 6.9 |
| sec | 2005_04 | dssp | ALL_proteins:sig | 10.6 | 33 | 31 | 42 | 49 | 18 | 17 | 15.0 | 21.5 | 27.9 | 19.5 | 5.1 | 0.17 | 0.18 | 0.18 | 0.24 | 0.29 | 0.20 | 8367.6 | 7.0 | 7.8 |
| sec | 2005_04 | dssp | ALL_proteins:errsig | 0.74 | 2 | 2 | 2 | 3 | 1 | 1 | 1.0 | 1.5 | 1.9 | 1.3 | 0.35 | 0.01 | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 585.8 | 0.49 | 0.54 |
| sec | 2005_04 | dssp | THIS_month:psum | 67 | 76 | 63 | 64 | 81 | 66 | 63 | 72.6 | 79.5 | 77 | 66.5 | 0.65 | 0.31 | 0.31 | 0.31 | 0.60 | 0.58 | 0.35 | 50 | 7.5 | 8 |
| sec | 2005_04 | dssp | 1y9l:A | 71.8 | 78 | 88 | 64 | 79 | 76 | 61 | 76.4 | 84 | 77 | 72 | 0.0 | 0.36 | 0.36 | 0.37 | 0.80 | 0.53 | 0.44 | 100.0 | 1.0 | 8.0 |
| sec | 2005_04 | dssp | 1ywy:A | 62.2 | 75 | 39 | 64 | 84 | 56 | 65 | 68.9 | 75 | 77 | 61 | 1.3 | 0.26 | 0.27 | 0.26 | 0.41 | 0.62 | 0.27 | 0.0 | 14.0 | 8.0 |
| sec | 2005_04 | dssp | THIS_month:psum | 67 | 76 | 63 | 64 | 81 | 66 | 63 | 72.6 | 79.5 | 77 | 66.5 | 0.65 | 0.31 | 0.31 | 0.31 | 0.60 | 0.58 | 0.35 | 50 | 7.5 | 8 |
| sec | 2005_04 | dssp | ALL_proteins:psum | 77.3 | 86 | 80 | 63 | 74 | 74 | 74 | 74.8 | 82.9 | 74.6 | 68.8 | 3.0 | 0.38 | 0.38 | 0.37 | 0.71 | 0.62 | 0.58 | 8431.3 | 7.3 | 6.9 |
| sec | 2005_04 | dssp | ALL_proteins:sig | 10.6 | 33 | 31 | 42 | 49 | 18 | 17 | 15.0 | 21.5 | 27.9 | 19.5 | 5.1 | 0.17 | 0.18 | 0.18 | 0.24 | 0.29 | 0.20 | 8367.6 | 7.0 | 7.8 |
| sec | 2005_04 | dssp | ALL_proteins:errsig | 0.74 | 2 | 2 | 2 | 3 | 1 | 1 | 1.0 | 1.5 | 1.9 | 1.3 | 0.35 | 0.01 | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 585.8 | 0.49 | 0.54 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |
| sots | standard of truth |
| id | identifier of protein |
| Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
| Q3H%o | correctly predicted helix residues (percentage of helix observed) |
| Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
| Q3E%o | correctly predicted strand residues (percentage of helix observed) |
| Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
| Q3L%o | correctly predicted loop residues (percentage of helix observed) |
| Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
| sov | per segment accuracy (three states) |
| sovH | per segment accuracy for helix residues |
| sovE | per segment accuracy for strand residues |
| sovL | per segment accuracy for non-regular residues |
| BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
| infoO | information index accuracy (percentage of observed) |
| infoP | information index accuracy (percentage of predicted) |
| corrH | Matthews correlation index for helix |
| corrE | Matthews correlation index for strand |
| corrL | Matthews correlation index for loop |
| var | variance over all proteins (1/N-1)*( score(i) - |
| sig | sigma (standard deviation) over all proteins (sqrt[var]) |
| errsig | significant differences ( standard dev / sqrt(Nprot) ) |