Home - Secondary structure Comparative modelling Contacts Threading - search - FTP - Mirrors - Bottom Explain scores

EVA sec results for: SAM-T99sec month: 2004_09

METHOD about:	../../../doc/explain_methods.html#PX_about_samt99_sec
METHOD url:	SAM-T99sec
TYPE :	sec
NPROT :	204
NWEEKS :	63
NOTE 1 :	here ALL results obtained for SAM-T99sec in month 2004_09 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2004_09 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2004_09	dssp	ALL_proteins:psum	77.3	86	80	63	74	74	74	74.8	82.9	74.6	68.8	3.0	0.38	0.38	0.37	0.71	0.62	0.58	8431.3	7.3	6.9
sec	2004_09	dssp	ALL_proteins:sig	10.6	33	31	42	49	18	17	15.0	21.5	27.9	19.5	5.1	0.17	0.18	0.18	0.24	0.29	0.20	8367.6	7.0	7.8
sec	2004_09	dssp	ALL_proteins:errsig	0.74	2	2	2	3	1	1	1.0	1.5	1.9	1.3	0.35	0.01	0.01	0.01	0.01	0.02	0.01	585.8	0.49	0.54
sec	2004_09	dssp	THIS_month:psum	76.3	79	75	54	47	71	83	73.6	82.2	69	73.7	2.4	0.42	0.42	0.42	0.75	0.71	0.58	72.7	5.8	8.2

sec	2004_09	dssp	1r02:A	75.8	60	90	0	0	88	80	77.0	60	100	91	6.0	0.29	0.33	0.26	0.58	1.0	0.63	100.0	15.0	9.0
sec	2004_09	dssp	1rmk:A	51.6	0	0	66	23	48	85	38.3	100	18	41	0.0	0.01	0.01	0.01	1.0	0.11	0.11	100.0	0.00	35.0
sec	2004_09	dssp	1srk:A	97.1	100	100	75	100	100	95	97.1	100	75	100	0.0	0.90	0.88	0.93	1.0	0.85	0.94	100.0	0.00	2.0
sec	2004_09	dssp	1u14:A	84.6	83	93	78	80	89	77	83.6	83	89	80	2.9	0.53	0.54	0.54	0.80	0.73	0.74	100.0	4.0	0.00
sec	2004_09	dssp	1u5t:C	77.5	87	76	92	50	68	88	68.5	86	74	59	0.0	0.40	0.43	0.39	0.70	0.64	0.57	100.0	5.0	6.0
sec	2004_09	dssp	1uta:A	79.2	100	92	75	54	65	85	80.6	100	67	72	0.0	0.57	0.58	0.56	0.94	0.52	0.58	0.0	2.0	7.0
sec	2004_09	dssp	1utx:A	83.3	100	80	0	0	78	90	84.5	95	0	88	6.0	0.50	0.41	0.61	0.74	1.0	0.76	0.0	13.0	9.0
sec	2004_09	dssp	1uw2:A	62.3	89	59	75	60	34	71	37.8	26	83	42	0.0	0.23	0.22	0.24	0.40	0.64	0.26	100.0	22.0	1.0
sec	2004_09	dssp	1vd2:A	87.6	100	88	84	84	82	88	92.2	100	92	87	0.0	0.64	0.65	0.65	0.92	0.78	0.74	100.0	3.0	0.00
sec	2004_09	dssp	1w2c:A	74.3	81	81	58	75	75	66	74.7	82	61	74	2.6	0.33	0.33	0.34	0.68	0.58	0.52	0.0	0.00	4.0
sec	2004_09	dssp	1xc0:A	66.7	73	73	0	0	61	91	75.8	73	100	77	9.0	0.23	0.28	0.19	0.51	1.0	0.56	100.0	0.00	18.0

sec	2004_09	dssp	THIS_month:psum	76.3	79	75	54	47	71	83	73.6	82.2	69	73.7	2.4	0.42	0.42	0.42	0.75	0.71	0.58	72.7	5.8	8.2

sec	2004_09	dssp	ALL_proteins:psum	77.3	86	80	63	74	74	74	74.8	82.9	74.6	68.8	3.0	0.38	0.38	0.37	0.71	0.62	0.58	8431.3	7.3	6.9
sec	2004_09	dssp	ALL_proteins:sig	10.6	33	31	42	49	18	17	15.0	21.5	27.9	19.5	5.1	0.17	0.18	0.18	0.24	0.29	0.20	8367.6	7.0	7.8
sec	2004_09	dssp	ALL_proteins:errsig	0.74	2	2	2	3	1	1	1.0	1.5	1.9	1.3	0.35	0.01	0.01	0.01	0.01	0.02	0.01	585.8	0.49	0.54

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2004_09
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

Explain scores - Home - Secondary structure Comparative modelling Contacts Threading - search - FTP - Mirrors - Top