Home - Secondary structure Comparative modelling Contacts Threading - search - FTP - Mirrors - Bottom Explain scores

EVA sec results for: SABLE2 month: 2004_08

METHOD about:	../../../doc/explain_methods.html#PX_about_sable2
METHOD url:	SABLE2
TYPE :	sec
NPROT :	159
NWEEKS :	52
NOTE 1 :	here ALL results obtained for SABLE2 in month 2004_08 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2004_08 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2004_08	dssp	ALL_proteins:psum	76.8	82	83	65	74	77	72	73.0	79.2	74.7	68.8	2.4	0.37	0.38	0.36	0.71	0.63	0.57	8490.5	7.3	6.2
sec	2004_08	dssp	ALL_proteins:sig	11.4	32	32	46	51	18	17	17.2	23.3	30.6	20.1	3.7	0.18	0.19	0.18	0.24	0.30	0.22	8432.2	7.5	7.0
sec	2004_08	dssp	ALL_proteins:errsig	0.90	2	2	3	4	1	1	1.3	1.8	2.4	1.5	0.30	0.01	0.01	0.01	0.01	0.02	0.01	668.7	0.59	0.55
sec	2004_08	dssp	THIS_month:psum	82.4	88	84	35	47	74	72	80.7	84.2	77.1	75	1.0	0.43	0.43	0.43	0.69	0.80	0.59	81.2	4.6	3

sec	2004_08	dssp	1q8d:A	83.9	73	100	0	0	100	72	95.6	100	0	93	0.0	0.50	0.47	0.53	0.74	1.0	0.72	0.0	14.0	1.0
sec	2004_08	dssp	1r7c:A	93.5	91	100	0	0	100	77	100.0	100	100	100	0.0	0.67	0.71	0.63	0.84	1.0	0.84	100.0	6.0	0.00
sec	2004_08	dssp	1r8g:A	79.3	91	82	57	80	73	74	76.4	85	61	71	1.1	0.42	0.41	0.44	0.75	0.63	0.58	100.0	5.0	4.0
sec	2004_08	dssp	1ro5:A	81.7	82	89	76	90	85	71	82.5	82	88	77	0.0	0.51	0.51	0.52	0.79	0.76	0.63	0.0	2.0	4.0
sec	2004_08	dssp	1rr7:A	88.3	96	92	0	0	67	90	86.1	100	100	62	0.0	0.53	0.57	0.50	0.81	1.0	0.71	100.0	3.0	4.0
sec	2004_08	dssp	1s7i:A	71.0	75	75	73	83	65	58	79.1	78	91	68	0.8	0.35	0.35	0.35	0.63	0.68	0.39	100.0	0.00	4.0
sec	2004_08	dssp	1sse:A	65.7	72	47	0	0	62	83	61.3	51	100	65	0.0	0.08	0.09	0.08	0.32	1.0	0.32	100.0	17.0	0.00
sec	2004_08	dssp	1sse:B	87.2	100	83	37	75	88	90	87.0	100	37	88	0.0	0.59	0.58	0.62	0.87	0.49	0.73	100.0	5.0	4.0
sec	2004_08	dssp	1ttw:A	73.7	93	64	60	77	70	81	78.9	98	55	82	6.7	0.34	0.35	0.35	0.67	0.57	0.59	0.0	12.0	6.0
sec	2004_08	dssp	1u4h:A	79.3	92	93	59	61	72	69	75.4	87	76	59	1.5	0.47	0.48	0.48	0.86	0.50	0.56	100.0	0.00	0.00
sec	2004_08	dssp	1u7i:A	82.8	100	88	70	93	88	73	89.5	100	84	90	0.0	0.58	0.58	0.58	0.92	0.70	0.66	100.0	2.0	10.0
sec	2004_08	dssp	1ug7:A	78.9	82	81	0	0	74	75	67.3	54	100	94	0.0	0.24	0.25	0.25	0.56	1.0	0.56	100.0	0.00	0.00
sec	2004_08	dssp	1urq:A	93.0	96	96	0	0	0	0	57.0	58	100	0	0.0	0.00	0.01	0.01	-0.03	1.0	-0.03	100.0	0.00	0.00
sec	2004_08	dssp	1w53:A	96.4	98	97	0	0	84	91	98.2	100	100	88	0.0	0.66	0.65	0.69	0.86	1.0	0.86	100.0	1.0	0.00
sec	2004_08	dssp	1wlq:C	81.4	87	80	46	100	86	80	72.5	67	53	88	5.3	0.43	0.41	0.46	0.66	0.65	0.72	100.0	4.0	7.0
sec	2004_08	dssp	1x7v:A	83.7	91	84	82	93	75	72	85.2	88	90	75	1.0	0.54	0.54	0.54	0.80	0.82	0.62	100.0	3.0	4.0

sec	2004_08	dssp	THIS_month:psum	82.4	88	84	35	47	74	72	80.7	84.2	77.1	75	1.0	0.43	0.43	0.43	0.69	0.80	0.59	81.2	4.6	3

sec	2004_08	dssp	ALL_proteins:psum	76.8	82	83	65	74	77	72	73.0	79.2	74.7	68.8	2.4	0.37	0.38	0.36	0.71	0.63	0.57	8490.5	7.3	6.2
sec	2004_08	dssp	ALL_proteins:sig	11.4	32	32	46	51	18	17	17.2	23.3	30.6	20.1	3.7	0.18	0.19	0.18	0.24	0.30	0.22	8432.2	7.5	7.0
sec	2004_08	dssp	ALL_proteins:errsig	0.90	2	2	3	4	1	1	1.3	1.8	2.4	1.5	0.30	0.01	0.01	0.01	0.01	0.02	0.01	668.7	0.59	0.55

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2004_08
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

Explain scores - Home - Secondary structure Comparative modelling Contacts Threading - search - FTP - Mirrors - Top